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Quantifying the relationships between variables is affected by the spatial structure in which they occur and the scales of the processes that affect them. First, this chapter covers the topics of spatial regression, spatial causal inference and the Mantel and partial Mantel statistics. These are all methods designed to assess the relationships between variables of interest within a spatial structure. Then, multiscale analysis is presented because it is key to understanding how ecological processes and patterns change with the scale of observation. Indeed, multiscale analysis has become increasingly important as ecologists address studies at larger and larger scales with increasing probability of significant spatial heterogeneity. We describe several approaches, including multiscale ordination (MSO), Morán’s eigenvector maps (MEMs) and wavelet decomposition.
This first chapter sets the context for the topics covered throughout the book by introducing the relationship between ecological processes and spatial structure, and by clarifying terminology related to both. These processes and spatial analysis methods are classified by several criteria, including static versus dynamic data and one versus several species. The concept of scale is applied to spatial, temporal and organizational contexts. The chapter provides a discussion regarding the background and motivation for spatial analysis in ecological research.
The spatial competition in the White Sea’s Halichondria panicea sponge was studied through a field experiment assessing growth in isogeneic and allogeneic sponge fragments of equal or different sizes. After 3 months and 1 year in seawater, growth was evaluated using ImageJ software on photographs. Intraspecific competition among allogeneic H. panicea individuals led to a decrease in relative growth, with the size of interacting individuals influencing competitive strategy. Optimal growth occurred when competitors were larger, minimal when sizes were equal, suggesting an alternative competitive strategy in the latter case. Competition between isogeneic individuals of H. panicea was weak or even absent; fusion of isogeneic fragments increased the growth intensity and substrate coverage by the sponge. Analysing the growth directions of sponges, we have found a phenomenon that may be interpreted as an attempt to ‘avoid’ physical contact with a competitor. In the neighbourhood with an allogeneic individual of larger or smaller size, the growth towards the competitor was lower than in other directions, regardless of whether the neighbouring individuals reached contact with each other or not. This may indicate that growth was redirected due to some distant communication mechanisms. The growth of allogeneic and isogeneic explants before contact occurred in a similar manner. Apparently, H. panicea cannot recognize the genetic nature of a competitor at a certain distance.
The aim of this study was to evaluate the antifungal spectrum of activity, synergy, and mode of action of carboxy-terminally amidated antimicrobial peptides (AMPs) derived from tachyplesin-I (T-I) from the horseshoe crab Tachypleus tridentatus and a lysine-rich analogue of magainin-2 (MSI-94) from the clawed frog Xenopus laevis. In vitro antimicrobial tests against 17 fungal strains demonstrated that the modified AMPs exhibited broad antifungal activity, particularly against filamentous fungi and yeasts relevant to aquaculture and agriculture. Additive antimicrobial activity was observed with the combination of T-I and MSI-94 against Candida albicans and Rhodotorula mucilaginosa, indicating an enhancement of their antiyeast properties. Furthermore, we found that both peptides target the fungal cell surface, increasing membrane permeability and leading to cell death. Overall, our findings highlight the biotechnological potential of aquatic AMPs in developing novel antifungal therapeutics applicable across various fields.
This study is the first to investigate the intra- and interspecific differences in otolith’s length (Lo), width (Wo), perimeter (Po), area (Ao), and mass asymmetry (OMA) in the pelagic Ethmalosa fimbriata, demersal Galeoides decadactylus, and benthic Cynoglossus monodi collected from the Lebe fishing site located along the Komo Estuary, central-western Gabon. The objectives were to (1) verify whether or not otolith morphometry differs in relation to living depth levels of the three species, (2) examine fluctuating asymmetry (FA) in the otolith morphometry, and (3) assess the relationship between OMA and total length (TL). A significant asymmetry was found in Lo, Wo, Po, and Ao between the left and right otoliths within and among males and females at the intraspecific level and only in Wo and Ao at the interspecific level due to FA. At the intraspecies level, a significant OMA was only observed within females of G. decadactylus and C. monodi and males and females of E. fimbriata and C. monodi. Moreover, a significant relationship between OMA and TL was detected only among males and females within the pelagic E. fimbriata and the demersal G. decadactylus, and no significant relationship was found at the interspecific level. As a result, significant differences in Wo and Ao and non-significant differences in OMA were recorded between the three species based on variations in living depth levels. These results highlight the importance of using otolith morphometry and OMA analyses to address the relationship between fish species and their living depth levels.
The 13 species of hornbills occurring in Indonesia have been studied to varying degrees, but a comprehensive identification of knowledge gaps is still lacking. We conducted a systematic review of the literature to identify the species and topics that require further investigation. We searched the literature using ScienceDirect, Google Scholar, Neliti, ResearchGate, and the Google search engine for all publications from 1970 to 2023. Publications were grouped under 15 conservation and ecological topics related to hornbills. Our review included 183 publications, comprising journal articles (56.3%), theses/dissertations (23.5%), conference papers (18.6%), and small portions of books and book sections (1.6%). Almost all the literature (72%) had been published after 2013, while the remaining (28%) was published before this period. The need for further studies across all research topics was identified for several species, including the Sumba Hornbill Rhyticeros everetti, Sulawesi Hornbill Rhabdotorrhinus exharratus, and Papuan Hornbill Rhyticeros plicatus. We also underscore the need for investigation into seed dispersal, ecotourism, and research methods across all hornbill species. Enhancing research and drawing public attention to Indonesia’s hornbills should increase their popularity and may serve to increase financial resources. This is the first systematic review of hornbill research for Indonesia and provides important information to determine future hornbill studies in the country.
The two-spined deepwater cardinalfish, Epigonus bispinosus Okamoto & Gon 2018 is documented for the first time from the Arabian Sea (n= 2) (137.4–151.1 mm SL). The specimens were caught by a demersal shrimp trawl operated along the Kerala coast at a depth of 250–420 m. This species was previously recorded in South Africa and northern Madagascar regions. The present study also provides the first molecular information on E. bispinosus based on mitochondrial cytochrome oxidase subunit I and 16S ribosomal RNA genes. Detailed taxonomic identification, and molecular and phylogenetic analysis are described.
The Saami Council, founded in 1956, is one of the oldest Indigenous-led international organisations in the world. Despite this, its role and place on the world stage have been seldom examined, as has the place of internationally facing Indigenous Peoples’ Organisations more broadly. Using the organisation’s historical documents, among other sources, this article constructs a historic case study of the Saami Council from its founding in 1956 until the year 2000 to examine how it has evolved during this period and to better understand its standing within the greater international community. As the study discusses, since its inception, the organisation has evolved into an example of an Indigenous-led diplomatic organisation – one that came about through the changing political climate of the 1970s and solidified in the late 1990s. This evolution has implications for how we understand Indigenous-led advocacy and the role of non-state actors in international relations.
Rallidae are frequent colonists of oceanic islands and are often susceptible to introduced predators. The Tristan Moorhen Gallinula nesiotis was endemic to Tristan da Cunha, South Atlantic and is thought to have gone extinct in the late nineteenth century. The closely related Gough Moorhen G. comeri was introduced to Tristan da Cunha from neighbouring Gough Island in 1956. We report historical records of their spread across Tristan da Cunha and the results of a population survey undertaken in February–March 2024. Gough Moorhens are now found across the entire island wherever there is suitable habitat from sea level to above 900 m elevation. Gough Moorhens prefer fern bush habitat on the Base, the plateau above the steep coastal cliffs. The total population is approximately 41,500 birds (95% confidence interval 24,000–72,000). Our density estimates (3–6 birds/ha) are similar to estimates for Gough Moorhens on Gough Island before the post-2021 population decline and are at the higher end of densities reported for oceanic island rallids, suggesting that the Tristan da Cunha population may be near carrying capacity.
The gastrointestinal microbiota of mammals plays a crucial role in host health, influencing nutrient absorption, lipid metabolism, and immune system regulation. This study examines the current state of research on gut microbiota in pinnipeds and cetaceans, significant indicators of ocean health. To this end, a bibliometric and an in-depth analysis was conducted using the Scopus database. A total of 83 articles published between 1994 and 2023 were found on this topic. In this period, publications showed a 6.9% annual increase, reflecting a growing interest in this field. The USA and China lead in research output, reflecting their high investment in research funding. Study topics were classified in characterization, characterization and comparison, bacterial isolation, and others. Regarding the origin of the samples, faecal samples predominated over gastrointestinal tissues and oral swabs. The most abundant bacterial phyla were Firmicutes, Proteobacteria, Fusobacteria, and Bacterioidetes. The research also highlights the presence of pathogenic bacteria underscoring the need to better understand the health implications for these species. The analysis also reveals that studies focus on a few species, such as Phoca vitulina (Harbor seal) and Tursiops truncatus (Bottlenose dolphin), reflecting a bias towards more accessible and studied species. To advance in this area, it is recommended to broaden the range of species and countries studied, improve sampling methodologies, and foster international collaborations. Research on marine mammal gut microbiota remains an expanding field, offering significant insights into the biology and ecology of these animals.
A considerable knowledge gap exists in relation to the presence and even existence of seagrass within Northern Ireland’s waters. Peer-reviewed publications on the historical ecology of seagrass are scarce and a collated timeline of references directly focusing on Northern Irish seagrasses does not exist. Recognising abiotic and biotic induced environmental change within key marine features such as seagrass is vital when attempting to measure the biodiversity and carbon sequestration services they provide. The research undertaken during this study identified three distinct periods within the archival records, which could be matched to the ecological history of seagrass in Northern Ireland. The first period (extensive and dense seagrass meadows from 1790 to 1880) was characterised by extensive seagrass meadows which were dense and healthy. The second period (degradation from 1880 to 1940) saw the beginnings of decline in seagrass from the 1790s, initially from anthropogenic influences and later from the seagrass wasting disease) and the final period (signs of recovery from 1940 to present day) showed small amounts of local regrowth of seagrass but at far reduced densities compared to the historical baseline described. These three defined periods all delivered varying degrees of anthropogenic stressors which determined the conservational health of seagrass in Northern Ireland. Seagrass habitats have become integral components in future-proofing the coastal marine environment against the effects of climate change and its associated impacts. Therefore, it is envisaged that the historical baseline that this manuscript provides will greatly benefit habitat managers in protecting, repairing, and restoring lost seagrass meadows.
In the present study, species of the genus Talorchestia (Dana, 1852), found in India are discussed. Previously, six species of the genus were recorded from India including Talorchestia affinis (Maccagno, 1936); Talorchestia buensis (Bhoi, Patro & Myers, 2023); Talorchestia gracilis (Dana, 1852); Talorchestia lakshadweepensis (Trivedi, Lowry & Myers, 2020b); Talorchestia martensii (Weber, 1892); and Talorchestia spinipalma (Dana, 1852). The taxonomy and distribution of these six species are discussed. Additionally, a new species, Talorchestia dandisp. nov., is described on the basis of specimens collected from Gujarat State, India. This new species can be differentiated from its closely related species, Talorchestia morinoi (Othman & Azman, 2007), by the comparatively longer antenna 2, the telson with higher length to width ratio, the epimeron 3 with marginal setae, and the subequal carpus and propodus of pereopod 3.
Designed for researchers in ecology at all levels and career stages, from students and postdoctoral fellows to seasoned professionals, this third edition reflects the significant advances in quantitative analysis of the past decade. It provides updated examples and methods, with reduced emphasis on older techniques that have seen limited use in recent ecological literature. The authors cover new and emerging approaches, including Hierarchical Bayesian analysis and spatio-temporal methods. A key feature is the integration of ecological and statistical concepts, highlighting the critical role that this type of analysis plays in ecological understanding. The book provides up-to-date summaries of methodological advancements in spatial and spatio-temporal analysis, along with insights into future developments in areas such as spatial graphs, multi-level networks, and machine learning applications. It also offers practical examples and guidance to help researchers select, apply, and interpret the appropriate methods.
A previously unknown raptor migration hot spot has been identified in southern Greece. During the post-breeding migration of 2024, a total of 11,790 individuals were recorded in 15 days, including 11,606 European Honey Buzzards Pernis apivorus. GPS tracking data from Finnish and Hungarian populations further highlight the site’s significance, suggesting that it could become the third migration hot spot for the species in the Mediterranean, alongside the Straits of Gibraltar and Messina. Plans to develop a wind farm in the area raise concerns due to its crucial role in the beginning of the long sea crossing to Libya.
A poorly understood and partially described planktonic copepod, Labidocera gangetica Sewell, 1934, is fully described herein from the Hooghly River, a century after its initial collection from the Rangoon (now Yangon) River estuary by Sewell (1912). The complete description of L. gangetica suggests possible uncertainty regarding the validity of the species Labidocera jaafari Othman, 1986, due to the morphological similarity in their overall body plan. In particular, the features of the leg 5 of both sexes are identical, suggesting that L. jaafari is probably a synonym of L. gangetica. Additionally, the taxonomic features of the mouthparts and swimming legs are illustrated for the first time.
This study marks the first update on Malaysia’s marine tardigrades after more than 50 years, presenting both the discovery of a new species, Batillipes malaysianussp. nov., and a new record, Batillipes rotundiculus. The specimens were collected from the intertidal zone at Pantai Pancur Hitam, Labuan, Malaysia, during two separate sampling efforts. Despite extensive sampling, the density of marine tardigrades in the area was found to be exceptionally low, with only a single specimen of B. malaysianussp. nov. and a limited number of other Batillipes individuals collected. The new species, B. malaysianussp. nov., is distinguished by unique morphological features, including setae scattered across the ventral cuticle – a trait not observed in any other species of the genus – and constricted primary clavae, a characteristic absent in other species of the B1 toe arrangement group. Additionally, B. rotundiculus represents the first confirmed record of this species in Malaysia, expanding its known distribution. This study also updates the global species count of Batillipes to 42, incorporating recent taxonomic changes and this new addition. An updated dichotomous key for the genus is provided, incorporating all species described to date. These findings underscore the importance of exploring understudied marine habitats and highlight the potential for discovering more tardigrade species in Malaysia.
‘Tropicalization’, the phenomenon of species shifting their ranges, has become increasingly prevalent as a response to environmental modifications induced by global change. This study points to an accelerated tropicalization process of marine fish species in the Gulf of Cadiz, a bioinvasion hotspot adjacent to the Strait of Gibraltar. We report accelerated, unusual, and rare occurrences of 15 fish species expanding and potentially establishing their ranges in the Gulf of Cadiz, driven by ocean warming over the past decade. These new insights are the combined consequence of a range expansion of some species, likely facilitated by temperature increases, an intensification of maritime traffic (with a consequent rise in propagule pressure), and a possible increase in sampling efforts and citizen science.
Many marine invertebrates are intermediate hosts to parasites. As some of these parasites may influence host behaviour and act as cryptic agents involved in mass mortality, knowledge of their presence, dynamics, and life cycles is important. Our aim with the present study is to provide a survey of parasites in subtidal cockles in the Limfjorden (Denmark), to examine their influence on cockles, and to assess their possible role in the surfacing of cockles, as this phenomenon is considered a prelude to mortality. The trematode fauna of the studied subtidal population was poor in species, but about 19% of the examined cockles in late summer and autumn were infected by Monorchis parvus – a species not previously reported from cockles in Danish waters. Heavily infected cockles were filled with small, undulating, worm-like sporocysts, each filled with metacercariae. From August to November, the number of metacercariae in sporocysts increased, and at a certain point, the growing stock of sporocysts is supposed to reach a level where the cockle is unable to perform vital life functions. Our data show that infected individuals exhibit less annual shell growth than uninfected ones. There was no significant difference in the prevalence of M. parvus between unburied and buried cockles. Cockle-eating fish from the family Sparidae are known as final hosts to M. parvus, but these fish do not occur in Danish waters. Therefore, the record-high presence of M. parvus in cockles from the Limfjorden is surprising, and we consider alternative life cycle options for this trematode.