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Like all science, studying primates is about asking the right questions in the right way. Most studies of primates fall within the life sciences, so I focus on the scientific method in this book. This chapter introduces how science works, then what it takes to be a primatologist. I outline the contents of the rest of the book and highlight the importance of keeping science healthy. I end by emphasising the need to respect other people and to promote inclusive science.
In this book, we’ve looked at how we study primates, including how we assess published studies, identify and develop a research question, formulate testable hypotheses and predictions, design and conduct a study that will test the predictions, select appropriate measures and samples, analyse the data, interpret the results, draw conclusions from the results in relation to the original question, and report the results in writing and presentations.
We find out what scientists know about a topic by searching the scientific literature. Literature searches range from a preliminary search to find out what we know about a general area to a specific search on a precise topic. As we explore a research topic, we focus our searches to identify the main open questions, the hypotheses proposed and the support for them, potential model systems and methods, and the experts in the field. Broad background reading is also fundamental preparation for a study because no study goes as planned and we may need to identify new research questions as we progress. I begin this chapter with sources of information we have available, then describe how we identify search terms and assess the quality of the literature we find, I explain the importance of reading broadly and how to choose what to read, and end with how we keep up with the literature
Scientific research is subject to serious inequalities of opportunity. Economic, political, social and cultural influences shape the opportunities available to people. Everyday and institutional practices exclude people based on aspects of their identity. These inequities intersect in complicated ways and have negative effects on both individuals and science. Some may go unnoticed, even by those who are negatively affected by them, because they are so deeply entrenched in our cultures. In this chapter, I briefly explore discrimination in relation to various aspects of identity, and how these intersect. I then describe the effects of discrimination on people and on science, and how we can help to combat inequities.
Good research design includes careful consideration of the number of independent observations (replicates) we need to test our predictions – the sample size. Some sampling decisions are beyond our control. For example, we may be limited by the number of specimens available, the animals we can observe, or the data we have at our disposal. Knowing in advance what we can and can’t test with our data will save wasted effort. This chapter covers how we use samples to study populations, the importance of statistical power, how to determine whether you have the power to test for an effect, and statistical precision.
Data collection is fun and exciting. It can also be difficult and dull at times. Things don’t always go to plan (ask other researchers about projects that didn’t work – we all have plenty of examples). In this chapter, I cover the importance of monitoring the progress of your project, being flexible and open to opportunities, being prepared for the unforeseen, collecting data rigorously and systematically, keeping data and samples safe, and being considerate of other people.
Good research needs good planning. A detailed research plan helps you determine the feasibility of your study and anticipate the issues you will face. In this chapter, I cover logistics and practicalities, how we use pilot studies to test the feasibility of a project, making a timeline, assessing risk, and budgeting.
Critical reading is an essential skill for scientists. As you read the rest of this book, you’ll come back to the literature again and again, to find out more about particular topics. Reading takes time and can be daunting, but it gets easier with experience. Reading also teaches you what goes where in a paper. The more you read, the better you will write. In this chapter I explain how to read articles, beginning with general advice, then providing questions to ask as you read each section of an article. Then I cover organising a reference collection and synthesising what you read.
A clearly defined research question allows us to formulate hypotheses that propose possible answers to that question. From these hypotheses, we can then derive specific, unambiguous predictions that allow us to test their validity with empirical data. Hypotheses and predictions serve to narrow down the infinite possibilities for data collection and determine the data we need to collect. In this chapter I cover formulating hypotheses and predictions, then explain that we often use proxies to test predictions and how practical constraints influence our thinking.
Primatology draws on theory and methods from diverse fields, including anatomy, anthropology, biology, ecology, medicine, psychology, veterinary sciences and zoology. The more than 500 species of primate range from tiny mouse lemurs to huge gorillas, and primatologists collect data in a variety of environments including in the field, research facilities, museums, sanctuaries, zoos, and from the literature. The variability in research interests, study animals and research sites means that there are no standard protocols for how to study primates. Nevertheless, asking good questions and designing appropriate studies to answer them are vital to produce high quality science. This accessible guide for graduate students and post-doctoral researchers explains how to develop a research question, formulate testable hypotheses and predictions, design and conduct a project and report the results. The focus is on research integrity and ethics throughout, and the book provides practical advice on overcoming common difficulties researchers face.
The morphology of the zoeal stages IX and XI of the shrimp Thalassocaris lucida is described and illustrated in detail from plankton specimens identified by barcoding of the mitochondrial 16S ribosomal RNA gene (sequence similarities 99.4–99.6%). The present study confirms the larval morphology of Thalassocaris, that shows distinct features within Pandaloidea: (1) carapace broad and dorsoventrally flattened, (2) coxal endite of maxilla with only one lobe, (3) basis of third maxilliped with a distal globose lobe. On the other hand, the funnel-shaped eyes, and the development with long series of larval stages of Thalassocaris indicate affinities with some genera of Pandalidae which corroborates the results of recent phylogenetic analyses in abandoning the family status of Thalassocarididae.
Behavioural plasticity in animals is tested whenever competitive interactions for space and/or food resources occur between wildlife and human activities. This study uses the concepts of operational and non-operational interactions between bottlenose dolphins (Tursiops truncatus) and artisanal fisheries in Alvarado, to search for differences in behaviour, age structure and group size. We conducted 20 surveys between 2015 and 2016, and recorded 64 groups by means of scan sampling from either a research boat or a fixed vantage point. Average dolphin group size was small (${\bar{\rm x}}$= 3.2, SD = 2.2 individuals) and fewer individuals were commonly present when interaction with fisheries occurred. Operational interactions were defined within the first 30 m and occurred mainly with lone individuals (54% recorded from the lighthouse and 82% during surveys); this benchmark also accounted for higher frequencies in locomotion and feeding (χ2 = 83.10; df = 7; P < 0.001). We found a higher rate of new behavioural events for dolphin groups furthest from human activities, as well as a decrease in behaviours that imply greater body exposure as dolphins approach the fishing spots. Age structure and dolphin group size were not different during and in the absence of interaction with fisheries, but most interactions involved male dolphins. Behavioural variations in the dolphins' repertoire are likely a strategy to reduce the risk of injuries or death when interacting with human activities; these dolphins seem to have habituated to or at least tolerate fishing activities within the study area, possibly constituting a sex-biased pressure.
Limpets and barnacles are important components of intertidal assemblages worldwide. This study examines the effects of barnacles on the foraging behaviour of the limpet Patella vulgata, which is the main algal grazer in the North-west Atlantic. The behaviour of limpets on a vertical seawall on the Isle of Man (UK) was investigated using autonomous radio-telemetry, comparing their activity patterns on plots characterized by dense barnacle cover and plots from which the barnacles had been removed. Limpet behaviour was investigated at mid-shore level, but two different elevations were considered. This experiment revealed a significant effect of barnacle cover on the activity of P. vulgata. Limpets on smooth surfaces spent a greater proportion of total time active than did limpets on barnacles. Movement activity was also greater in areas that were lower down in the tidal range. In general, limpets were either predominantly active during diurnal high or nocturnal low tides and always avoided nocturnal high tides. Individuals on barnacles at the higher elevation concentrated their activity during nocturnal low water. All the other groups of limpets (smooth surfaces on the upper level and all individuals on the lower shore) had more excursions centred around daylight hours with an equal distribution of activity between periods of low and high water. Inter-individual variability was, however, pronounced.
Fibropapillomatosis (FP) can be an important conservation threat to green sea turtles (Chelonia mydas) due to its widespread distribution and complex aetiology. Thus, understanding the impacts of FP in sea turtle populations is a research priority towards conservation efforts. The body condition index (BCI), based on straight carapace length (SCL) and body mass (BM), is an accurate indicator of body-nutritional condition that can be used in routine green turtle health evaluations. This study aimed to compare BCI in FP-free (N = 369) and FP-affected (N = 518) green turtles from Brazilian feeding areas. Body condition indices were evaluated in terms of the South-west Atlantic Fibropapillomatosis Score – FPSSWA (mild, moderate and severe), study sites (five Brazilian states), origin (intentional capture, fishery, stranding and afloat) and sex (when known). Curved and straight carapace lengths, and body mass were recorded in order to calculate BCI. Statistical analysis revealed significant differences in BCI among green turtles from different study areas (P = 0.02), and lower BCI values in FP-free than in FP-positive individuals (P < 0.0001). With regards to origin, the highest BCI was found in the intentional capture group (N = 245; 1.47 ± 0.16), followed by fishery (N = 180; 1.46 ± 0.20). Analysis according to sex revealed a higher mean BCI among females than males (P < 0.017). This study provides relevant data on the health and nutritional status of green turtles along the Brazilian coast, in important feeding areas for this species.
The syllid genus Anguillosyllis is relatively rare and mainly restricted to deep waters. The phylogenetic position of the genus was only recently inferred, while its reproductive mode, an important trait in the classification of the Syllidae, remains unknown. We describe herein our finding of one specimen of Anguillosyllis lanai with fragile egg capsules dorsally attached to some parapodial lobes, the first observation to date providing information about reproductive aspects of animals of the genus, and discuss possible evolutionary and phylogenetic implications of this finding.
Natural mortality (M) is a key parameter for understanding population dynamics, especially in relation to harvested populations. Direct observations of M in crustaceans are scarce, due to the moulting process. Indirect methods to estimate M with easier-to-obtain life history attributes are therefore used routinely. Given their theoretical background, we reviewed the applicability of these methods for crustaceans. We applied the selected methods to two crustacean species harvested in Chilean waters: the yellow squat lobster (Cervimunida johni) and red squat lobster (Pleuroncodes monodon). Uncertainty of each M estimate was incorporated in the life history parameters that input into the indirect method (trait-error) and parameters defining the indirect method (coefficient-trait-error). Methods based on the relationship between total mortality and maximum age, or with different ages and based on life history theory were the most appropriate for crustaceans since they apply across taxa. M estimates showed high variability between species, sexes and areas. Estimations of M for C. johni varied from 0.13 to 0.28 (year−1) for males and 0.17 to 0.51 (year−1) for females. For P. monodon values for the north varied from 0.26 to 0.37 (year−1) for males and 0.24 to 0.45 (year−1) for females. In the south, values of M were higher for both males (0.43–0.68 year−1) and females (0.41–1.06 year−1). High variability in the M estimates was associated with the method and number of parameters, their uncertainty, theoretical background and probability distribution. M estimates are not comparable, raising the need to propagate the uncertainty of M into the stock assessment of Chilean squat lobsters.
The burrowing shrimp Neotrypaea californiensis is an important ecosystem engineer that inhabits estuaries along the US Pacific Northwest coast. This species plays an important role in the estuarine ecosystem but negatively impacts oyster aquaculture through its burrowing activities. Development of population models for burrowing shrimp management requires more detailed life history information and accurate estimates of age. Ageing studies have been limited for crustaceans because it is generally believed that they do not retain structures with annual deposits commonly used to age other marine organisms, when they moult their exoskeletons. A mesocosm growth experiment and field surveys were combined to compare the performance of two ageing techniques, quantification of autofluorescent lipofuscin and gastric mill ossicular lamellae, for estimating age in N. californiensis. Animals of known age were grown in outdoor mesocosms and sampled regularly to correlate age metrics with body size and true age. Lipofuscin concentration increased with time across multiple cohorts at the rate of 1.430 ± 0.060 ng µg−1 year−1. Lamellae counts also increased with time (4.922 ± 0.337 lamellae year−1). While age estimates based on lipofuscin concentration and lamellae counts generally agreed, carapace size did not correlate to either age metric. Lamellae counts from field collections suggest they are added sequentially with age but the relationship can vary by location. When used together, the application of both techniques may provide robust estimates of crustacean age especially when size-based measurements are imprecise.