Describing species has been a formal, intellectually rich and influential applied and basic area of study for many of the past 260 years. While formally described eukaryotic diversity still falls short of estimated eukaryotic species diversity by many hundreds of thousands of species, some recent accounts have suggested a growing number of taxonomists are within reach of describing all extant species. We present a case study that illustrates, to the contrary, a recent ‘taxonomic impediment’ in part attributable to derogation of taxonomy as a scientific discipline: contemporary practice has re-interpreted taxonomy largely as an endeavour in enumerating species. We argue that challenges lie in (1) a poor understanding of taxonomy's epistemology; (2) excessive displacement of interest toward ecological or molecular studies; (3) over-interpretation of the contributions of multiple authors describing a species; and (4) perspectives that are strongly influenced by well-known taxa. The historical and recent literature on scyphozoans reveal ghosts of taxonomy's past that persist in the present, but suggest also that a renaissance enabled by integrative taxonomy is possible in the (near) future.

The blue shark Prionace glauca is the most abundant species in the artisanal driftnet fishery off the coastal waters of Ivory Coast. The reproductive parameters were investigated with the aim of providing basic information on the reproductive biology for fisheries management. A total of 424 specimens (256 males and 168 females) ranging from 170–330 cm in total length (TL) were sampled between August 2014 and November 2016. Sample for embryonic sex ratio was obtained from 18 litters of 503 individuals (255 males and 248 females). The embryonic sex ratio was not significantly different from 1:1 (χ2 = 0.10, P > 0.05, N = 503). The size at 50% maturity (L50) was 218.1 cm TL for males and 223.3 cm TL for females. The litter size based on the number of embryos varied from 6 to 62, with an average of 30 embryos. Mating started in July whereas ovulation, fertilization and uterine eggs occurred in late October–November. Smallest embryos of 3–5 cm in stretch total length (STL) appeared in uterus from November to January. The embryo size varied widely among months, and well-pigmented embryos were already present in April–May samples, although most of them occurred in August–September, suggesting a gestation period of around 11 months. The absence of neonates in catches, as well as parturition females, does not support a hypothesis that parturition takes place in the Gulf of Guinea.

Thermoregulation has been suggested to influence mitochondrial DNA (mtDNA) evolution. Previous studies revealed that the mitochondrial protein-coding genes of fish living in temperate climates have smaller dN/dS (Non-synonymous substitution rate/Synonymous substitution rate) than tropical species. However, it is unknown whether different geographic populations of one fish species experience stronger selective pressures between cold and warm climates. The biological characteristics of the Japanese sand lance, Ammodytes personatus in the North-western Pacific is well-suited for assessing the performance of mtDNA evolution among separate geographic populations. In this study, we focused on the mitochondrial ATP6 gene of A. personatus using 174 individuals from eight different sea temperature populations. Two distinct haplotype lineages and a significant population structure (P = 0.016) were found in this species. The frequencies of the two lineages varied with the changes of annual sea temperature. The southern lineage (lineage A, dN/dS = 0.0384) showed a larger dN/dS value than the northern lineage (lineage B, dN/dS = 0.0167), suggesting that sea temperature greatly influences the evolution of the two lineages. The result provides robust evidence of local adaptation between populations in A. personatus.

Stomach contents analysis and stable isotope results indicate M. hubbsi is a generalist predator that feeds mainly on demersal fishes, followed by crustaceans and cephalopods. Ontogenetic changes in diet were identified, with fish importance increasing in the diet with hake size. Smaller hake (<250 mm) fed mostly on the sepiolid Semirossia tenera (89.45%IRI) and engraulid fish (89.96%IRI). Mid-sized hake (250–300 mm) fed mainly on benthic fish such as Bellator brachychir (95.63%IRI) and euphausiids (56.46%IRI), while larger hake (>300 mm) fed heavily on Dactylopterus volitans (94.80%IRI) and occasionally on a variety of teleosts. Significant correlations between δ13C (P < 0.05), THg (P < 0.001) and hake size occurred, whereas no relationship was observed between δ15N and hake size or δ15N and total mercury. Signatures were lowest in smaller hake with a tendency of increasing with size. Smaller and larger hake were significantly different in δ13C. Differences regarding isotopic niche width were quantified for each size group; trophic diversity and trophic redundancy among them were negligible, but hake >300 mm possibly have a larger feeding plasticity due to the combination of prey from a wide trophic level range.

In some metazoans, the body surface is entirely or partly covered with an array of nipples about 100 nm or less in height. This structure, a nipple array, is sometimes called the moth-eye structure because it serves as an anti-reflection property on the compound eyes of a night moth. The nipple array is supposed to be a multifunctional structure since this structure occurs in various species across different taxa. Here, we hypothesize that the nipple array may prevent the settlement of epibionts that are often a nuisance and potentially cause serious problems for the host. Using a synthetic film that imitates the nipple array, we tested the substrate selection within ascidian larval settlement. The results indicate that the nipple array has anti-fouling properties, since more larvae settled on the flat surface than the nipple array (P < 0.01, paired t-test). The present results demonstrated that the nipple array potentially serves an anti-fouling function on the body surface, which should be important especially for sessile organisms.

This study presents the first documented observations of a brachyuran crab's proactive fishing behaviour in conjunction with mangrove pneumatophores which are employed as prey-localization devices. All ecological data were recorded in situ using simple behavioural observations, visual census and field experiments. Field experiments were based on stimulus-response and ecological surveys on random displacement. Assemblages of Metopograpsus messor were observed daily performing a foraging/predatory tide-related cyclic behaviour pattern in an arid mangrove ecosystem which experiences challenging environmental conditions. Prey-localizing behaviour was observed during the flood tide when pneumatophore-borne vibrations were used to identify potential prey. The prey simulation field experiment (where a single pneumatophore was stimulated by knocking) showed that in >93% of instances a crab approached the exact pneumatophore being stimulated. As water levels increased during the tidal cycle M. messor was observed climbing pneumatophores. The crabs anchored themselves to the pneumatophore just above the water level with their pereiopods. The chelipeds were positioned in a pincher-like trap, and remained in a ‘capture-position’ waiting for prey to move within striking range. This characteristic fishing behaviour was performed daily by a population of M. messor. Ecological observations suggest that both these predatory behaviours are associated with the fish Aphanius dispar dispar in a direct prey–predator relation. Evidence suggests that these fishing behaviours evolved due to characteristics within the M. messor phylogeny (foraging in intertidal zones; daily displacement following tidal levels; high sensitivity to vibrations; and an opportunist diet) and its associated environment (presence of pneumatophores and high availability of a fish resource).

Where two species occupy the same habitat and similar niches, competition is likely to drive small-scale spatial niche separation or resource partitioning that may not be immediately apparent. A stable isotope approach was used to investigate potential trophic niche separation between co-existing rocky shore crabs in the North-West (NW) Arabian Gulf. Leptodius exaratus and Pilumnopeus convexus which occupy similar shore height on the same rocky intertidal habitats. We also investigated conspecific differences between males vs females and adults vs juveniles. δ15N results indicated that adults of both species occupy a high trophic level in the rocky shore community, suggesting similar functional roles and potential for competition for food resources, while significant differences in δ13C values indicated differences in dietary sources between the two species, and also changes in diet between juveniles and adults in both species. MixSIAR analysis of δ15N and δ13C data confirmed field observations that both species are generalist omnivores, with potential for direct competition including adult predation on juveniles, including conspecifics. Differentiation in isotopic niches (SIBER analysis) was mainly driven by the significant differences in δ13C values, suggesting that co-existence of the two crab species is at least in part mediated by trophic niche separation or dietary resource partitioning, with some (unquantified) potential for spatial resource partitioning at the microhabitat level.

Despite being classed as an asocial species, aggregations of sea anemones can be common in abundant species. UK populations of the geographically common aggressive intertidal sea anemone Actinia equina, form clustered aggregations notwithstanding a violent nature towards neighbours and relatives. Smaller in body size, and more abundant than those found in warmer climates, little research has been undertaken to discover what factors affect body size. This study investigates whether aggregation, distance to neighbour, submergence at low tide or pH in rock pools affect body size of A. equina in their natural habitat. Populations were investigated at five sites on the Yorkshire coast during August and September 2016. A total of 562 anemones were recorded revealing that solitary anemones were significantly larger than those found in clustered aggregations. In addition, anemones found submerged in rock pools at low tide were significantly larger than those found on emergent rock, and smaller anemones were found in significantly higher pH conditions (8.5+) than larger anemones. Anemones submerged at low tide are constantly able to feed and not subject to harsh conditions such as wind exposure and temperature, hence they can achieve larger sizes. Consequently, the size of the anemones may reflect a trade-off between the benefits of aggregating in exposed environments and the costs of competition for a reduced food resource.

This study aimed to qualitatively and quantitatively analyse the molluscan assemblages associated with a Halodule wrightii seagrass bed in a rarely studied area within a conservation unit in north-eastern Brazil. Seasonal and spatial changes in several seagrass meadow characteristics, including sediment, were evaluated to explain temporal and spatial variations in the molluscs found there. The molluscan community differed in its structure among periods and meadows, as well as in the composition of its infaunal and epifaunal assemblages. The results of this study indicated that molluscs are affected by the particular characteristics of a seagrass meadow, especially by its location in the intertidal zone, more than by the area of the meadow. Molluscs were also affected by other characteristics of the seagrass meadow, such as above-ground biomass and shoot density. Changes in all molluscan assemblages were also mediated by differences among months and seasons in this region of the western equatorial Atlantic, but not by seasonal changes of the meadow. The studied meadow was found to be one of the densest in Brazil, which has considerable importance to its associated fauna.

We examined the feeding ecology (diet, trophic width and trophic position) of five demersal shark species (Mustelus mustelus Linnaeus, 1758, Galeus melastomus Rafinesque, 1810, Scyliorhinus canicula Linnaeus, 1758, Scyliorhinus stellaris Linnaeus, 1758, Squalus blainville, Risso, 1826) coexisting in the north-eastern Aegean Sea (around Gökçeda Island) by combining stomach content and stable isotope analyses. The results indicate clear differences in diet between the five sharks. Cephalopods were mainly found in diet of S. stellaris and M. mustelus and the stomachs of G. melastomus, S. canicula and S. blainville included fish. S. blainville showed the highest trophic position in respect of stable isotope analysis (TPsia = 4.89) around Gökçeada Island. It was followed by G. melastomus (TPsia = 4.57). Direct isotopic values (both stable nitrogen and carbon) and isotopic niche width based on the Standard Ellipse Area (SEA) clearly differed among the five shark species. In particular, S. blainville was isotopically segregated from the other shark species studied, showing a narrow isotopic trophic niche and higher trophic level. In contrast, M. mustelus had the widest trophic niche of the five species studied. The niche width of S. stellaris was narrower than M. mustelus and S. canicula but wider than S. blainville and G. melastomus. SEA showed that G. melastomus has a specialized feeding strategy in the area. There is no overlap between S. canicula and S. stellaris in trophic width.

Many studies have already assessed how wave action may affect morphology of intertidal species among sites that vary in wave exposure, but few attempted to look to this issue in smaller scales. Using the most common limpet of the Brazilian coast, Lottia subrugosa, and assuming position on rocky boulders as a proxy for wave action at small scale, we tested the hypothesis that waves may also influence limpet morphology at a smaller spatial scale by investigating how individual size, foot area and shell shape vary between sheltered and exposed boulder sides on three shores in the coast of Ubatuba, Brazil. Limpets consistently showed a proportionally larger foot on exposed boulder sides for all shores, indicating that stronger attachment is an important mechanism to deal with wave action dislodgement at a smaller scale. Shell shape also varied in the scale investigated here, with more conical (dissipative) shells occurring in exposed boulder sides in one exposed shore across time and in the other exposed shore in one year. Shell shape did not vary regarding boulder sides across time in the most sheltered shore. Although we did not assess large spatial scale effects of wave action in this study, variations of the effect of waves at small spatial scale observed for shell shape suggest that it may be modulated by the local wave exposure regime. Our work highlights the importance of wave action at small spatial scales, and may help to understand the ecological variability of limpets inhabiting rocky shores.

Thermal stress events threaten coral populations by disrupting symbiosis between the coral animal and microalgal symbionts in its tissues. These symbionts are key players in the response of the coral holobiont to elevated temperature. However, little is known about the microalgal symbiont type in select corals in the north-western Philippines and how they contribute to the differential responses of coral species. Based on sequencing of major ITS2 bands from DGGE, the dominant algal symbiont in Acropora digitifera, A. millepora, A. tenuis and Favites colemani was identified to be closely related to ITS2 type C3u, Montipora digitata contained ITS2 type C15, and Seriatopora caliendrum hosted ITS2 types similar to C3-Gulf and D1. Thin branching corals, such as A. tenuis and S. caliendrum, exhibited the greatest reduction in photochemical efficiency (Fv/Fm) and symbiont density at elevated temperature, followed by M. digitata and A. millepora, to a lesser extent. A. digitifera and F. colemani were least affected by the temperature treatment. Reduction in Fv/Fm and symbiont density was more apparent in A. tenuis and A. millepora than in M. digitata and F. colemani, although these species all host ITS2 type C3u symbionts. These results suggest that the impact of elevated temperature is influenced by factors apart from symbiont type. This highlights the importance of further studies on the diversity of corals and their microalgal symbionts in the region to gain insights into their potential resilience to recurring thermal stress events.