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This study presents the first sponge biodiversity inventory of Los Picos reef in Veracruz, Mexico. Although the Veracruz Reef System is known for its high sponge diversity, several recently discovered submerged reefs – including Los Picos – had remained biologically uncharacterised until this investigation. Our comprehensive inventory documents 37 species, identified at the species level, all belonging to Demospongiae; 15 of which are new records for the Mexican coast, and 13 for the Gulf of Mexico (GoM). Six species are described as new: Psammocinia alcoladoi sp. nov., distinguished by a dermal surface armoured with sand and spongin filaments, lightly fasciculated primary fibres, and non fasciculated secondary with long conules and slender fiber diameters; Hyatella hyattus sp. nov., distinguished by its soft and lobular habitus, and slender fiber diameters; Zyzzya marinagreenae sp. nov., is an open fistula with acanthostrongyles irregularly spined and both, acanthostrongyles and isochelae, smaller in size; Desmapsamma paulumharenae sp. nov., has an encrusting shape with larger spicules than D. anchorata; Phorbas veracruzanus sp. nov., consists of conule-shaped processes on an embedded layer and morphometric differences on spicules; and Timea citlallitzina sp. nov., stands out by the lumpy tips of the oxyaster type. The whole, highlighted by two genera, Psammocinia and Zyzzya, both reported for the first time in the GoM. Samples were obtained by SCUBA surveys at 10–16 m depth, between August and October 2017.
In the 1990s, the Convention on Biological Diversity (CBD) emerged as the primary international forum for managing the interface between biodiversity and biotechnology. Three legally binding protocols to the Convention were concluded, all aiming to regulate bio-innovation. Despite the rapid pace of biotechnological innovation, however, and its implications for biodiversity and equity, CBD policy outcomes have recently shifted towards lower stringency in substance and weaker institutionalization in process. To confirm this trend, we examine decisions adopted by the CBD Conferences of the Parties in 2022 and 2024. We focus on outcomes on three key agenda items: (i) digital sequence information on genetic resources, (ii) risk assessment of living modified organisms, and (iii) synthetic biology. We analyze shifts towards lower stringency in the light of scholarship on legalization and de-legalization, including the softening of international law. We conclude by assessing the implications for the CBD, and for global biotechnology governance more generally.
Global biodiversity is decreasing at an alarming rate, and Britain is now one of the most nature-depleted countries on the planet. This matters to archaeologists as it places limitations on our personal experience of ‘nature’ and damages the collective archaeological imagination, diluting our capacity to envisage the richness and diversity of the past worlds we seek to understand. Here, the author argues that we must learn, from contemporary biodiversity projects, animate Indigenous worldviews and enmeshed human-nonhuman ecosystems, to rewild our minds—for the sake of the past worlds we study and the future worlds that our narratives help shape.
The bush dog Speothos venaticus, a short-legged, medium-sized Neotropical canid, remains elusive despite its wide geographical range. We present the first documented occurrence of this species within Rio Doce State Park, Minas Gerais state, Brazil. This Park is a unique, well-preserved area with a diverse array of mammal species, a rarity in the fragmented Atlantic Forest. We recorded the bush dog after 7,744 camera-trap days near Lagoa dos Patos, one of the Park’s lakes. This new record is a significant range extension for the species within the Atlantic Forest of Minas Gerais state, as the nearest known record is c. 420 km to the south. The new record is the northernmost documented occurrence of the bush dog in the Brazilian Atlantic Forest. This finding is a significant addition to the Park’s mammalian carnivore community, and underscores its importance as high-quality habitat for rare species such as the bush dog, and its value for scientific research and biodiversity conservation.
It is assumed that the biology and ecology of commercial fish species are relatively well-known, given that many of these parameters are key for stock assessment in fisheries management. Surprisingly (or not), several new parasite species are described annually from fish that are of commercial and cultural importance. Haddock (Melanogrammus aeglefinus) is an important commercial fish species in the North Atlantic with more than 50 parasite species having been reported from it. Despite its commercial importance in Icelandic waters, only 11 parasite species have been reported from Icelandic haddock. In February and March 2023, 26 haddock were sampled, including 16 and 10 from the north and south of Iceland, respectively. Fish were examined for parasites, with a focus on macroparasites (large, usually visible to the eye). Parasites were identified morphologically with identifications of helminths confirmed using DNA barcoding (Sanger sequencing). Overall, 19 different parasite species were recovered with 17 being shared between haddock sampled from the north and south of Iceland. Of these, eight represent new geographical records for parasites of haddock in Icelandic waters. Our study indicates that monitoring for parasites remains important, regardless of how well a species has been studied. Furthermore, reporting parasites per organ and per region, especially when areas are known to be influenced by different abiotic and physical features, is important in the context of parasites as biological tags for stock identification. Despite a small sample size, our study suggests that some parasites might act as potential biological tags for stock identification of haddock in Icelandic waters.
The cold, low carbon dioxide (CO2) conditions of the Pleistocene epoch fundamentally structured ecosystems, profoundly influencing the evolutionary trajectory of Homo sapiens and other large mammals. Although often considered uniquely stable, the Holocene is more usefully viewed as just another Pleistocene interglacial interval that was naturally trending towards a renewed glacial phase. However, rapid anthropogenic greenhouse gas emission rates have reversed this trajectory and might have now foreclosed the prospect of returning to cyclic glacial climates for millennia. A large set of flora and fauna has benefited from low CO2 conditions, which we define as low-CO2 dependents. By elevating atmospheric CO2 concentrations beyond levels seen for millions of years, we have accelerated global warming beyond the adaptive capacities of many species and ecosystems. African savannas and grasslands are particularly relevant in this context because this was the environment in which the human species evolved. These biomes have been previously maintained by fire and carbon scarcity but are now experiencing woody encroachment driven by rising CO2. The resultant global reforestation further threatens biodiversity adapted to open ecosystems, while rewilding initiatives must therefore pair prehistoric analogues with explicit climate-fitness tests that anticipate mid-century CO2 trajectories. Addressing these complex challenges requires both targeted local interventions and systemic policy reforms, grounded in a pragmatic recognition of the transient nature of the Holocene. Recognising the transience of any single baseline allows conservation and agriculture to plan for a dynamic, overshoot-prone future.
This chapter introduces a method for empirically valuing animal welfare. The method involves calibrating key parameters discussed earlier, namely, the animal welfare score, utility potentials, and a monetization parameter. Three applications are presented: one examining the animal welfare levy applied to meat prices in France, another analyzing the global trend in animal welfare, and a third focused on a biodiversity management project.
The number of global environmental institutions has increased dramatically over the past decade. Yet environmental governance is widely seen as failing. Focusing on biodiversity politics, we argue that many key governance institutions, particularly those advancing market solutions, are themselves deeply implicated in this persistent failure. Drawing on the sociology of expertise, we show how two recently established institutions – the European Business and Nature Platform and the Network for Greening the Financial System – attempt to address the uncomfortable reality of biodiversity governance failures and the risks of their own future failures by creating a series of diversions to deflect attention and by displacing the focus of biodiversity governance from core issues to their own efforts to develop metrics. These dynamics render these institutions both ‘failure-proof’ and inherently ‘failure-prone’, ultimately reinforcing rather than resolving the problems they aim to address.
In Colombia, monitoring biodiversity studies is hindered due to logistical, economic and security issues due to armed conflict. This study aimed for the application of environmental DNA (eDNA) to monitor mammalian diversity following riparian outlets along the Colombian Pacific coast. Fieldwork was conducted during two different periods, August to November 2021 and February to May 2022. A total of five orders of terrestrial mammals were recorded, distributed in ten families and 17 species. The most abundant orders were Rodentia and Didelphimorphia, with a total of six and five species each. Our methodology can detect relevant and emblematic terrestrial species reported for the region with traditional methods, such as Chironectes minimus and Cabassous centralis, as well as species that had not been confirmed to occur in that area, like Speothos venaticus. Our results demonstrate the high potential for the development of the eDNA tool in Colombia for detection of vulnerable species and, in the future, supporting conservation processes.
Parasitic nematodes within Onchocercidae are a diverse group transmitted by hematophagous arthropods. This study investigated the molecular occurrence of filarioid nematodes in 93 wild mammals from the Amazon, Cerrado and Pantanal biomes in Brazil, based on the analysis of the mitochondrial genes 12S ribosomal DNA gene (12S rDNA) and cytochrome c oxidase subunit I gene (COI). Conventional polymerase chain reaction (cPCR) targeting the 12S rDNA gene yielded positive results in 14·44% (13/93) of the samples, including 9·86% of jaguars (7/71), 50% of pumas (1/2), 12·5% of giant anteaters (1/8), 50% of ocelots (1/2) and 60% of crab-eating foxes (3/5). Among the 12S-positive samples, 46% (6/13) also tested positive for the COI gene; however, only 1 sequence was suitable for further analysis. Phylogenetic analyses based on 12S gene sequences revealed 4 distinct lineages within the family Onchocercidae. Groups Ia and Ib, composed of Cerrado and Pantanal sequences from jaguars, formed sister clades to Brugia pahangi and Malayfilaria sofiani, respectively. The sequence from the giant anteater (Group Ic) was more divergent, forming a sister clade to species of the genera Malayfilaria, Wuchereria, and Brugia. Group II included sequences closely related to Dirofilaria immitis and D. striata, encompassing samples from crab-eating foxes, ocelots and a puma. These findings suggest that several wild mammal species may serve as reservoirs for previously uncharacterized Onchocercidae nematodes. Our findings expand the existing knowledge on host associations of filarioid nematodes infecting wild mammals from the Pantanal, the Cerrado and the Amazon Rainforest.
Environmental DNA (eDNA) metabarcoding has lagged in parasite biodiversity assessments. We implemented this method to examine parasite diversity in sediment and water from 4 physically connected aquatic habitats in coastal South Carolina, USA, as part of a ParasiteBlitz in April 2023. Sediment was collected using a syringe corer, and water was sampled using active filtration and passive collection. Five amplicon libraries, using primers targeting portions of the mitochondrial COI of platyhelminths and 18S ribosomal RNA genes of nematodes, myxozoans, microsporidians, and protists, successfully yielded parasite sequences. Out of >5.8 million sequences, we identified >1,000 parasite amplicon sequence variants (ASVs) corresponding to ~600 parasite operational taxonomic units, from 6 parasite groups. Most diversity was observed among the microsporidians, whose assay demonstrated the highest fidelity. Actively-filtered water samples captured ASVs of all 6 groups, whereas sediment captured only 4, despite yielding 3× as many ASVs. Low DNA yields from passive water samples resulted in fewer, but some unique, ASVs representing 3 parasite groups. The most efficient sampling method varied with respect to parasite group across habitats, and the parasite communities from each habitat were distinct regardless of sampling method. We detected ASVs of 9 named species, 4 of which may represent introductions to the US. The abundance of our results demonstrates the effectiveness and efficiency of eDNA metabarcoding for assessing parasite diversity during short, intensive surveys, and highlights the critical need for more comprehensive sequence databases and the development of primers for those parasite taxa that elude detection using eDNA methods.
Chapter 3 delves into the functions and foundations of international environmental law. International environmental law is an institution based on the deliberate redundancy of parallel and overlapping networks that contribute to its resilience and to the maintenance of the minimum public order. We analyze the foundational purposes of international environmental law: the quest for equity and the pursuit of effectiveness. We underline that addressing matters of distributive equity successfully is the sine qua non condition for the effective protection of environmental commons. The tragedy of the commons rationale that precipitated the enclosure of common pool resources in national systems is also driving the enclosure of global common resources. This chapter analyzes the specifics of this enclosure, as it has been unfolding in fisheries, marine genetic resources, germplasm resources and related knowledge, deep-seabed resources, freshwater resources, air, seas, chemicals, wastes, and space. The nature of inclusionary and exclusionary enclosures and how these types of enclosure affect perceptions of distributive equity are critically examined. Finally, international environmental regimes are evaluated based on the effectiveness of the enclosure they have commanded and the perceptions of equity held by the stakeholders and participants in the regimes.
The purpose of this study is to examine the law and policy for the management and protection of the global commons. It analyzes the protection and distribution of global common resources from fairness, effectiveness and world order perspectives. We examine whether international environmental policymaking has resulted in the fair allocation of global common resources that will be effective in protecting the environment.
Traditional pastoral practices have maintained Alpine grasslands over thousands of years, and Alpine biodiversity now depends on these practices. Grasslands are also central to the identity of pastoral communities: They are biocultural landscapes. Across the Alps, these landscapes are now threatened by high rates of agricultural land abandonment as traditional, labor-intensive agricultural methods become uneconomic, and small-scale development increases. The Autonomous Province of Bozen/Bolzano-South Tyrol, Italy, experiences some of the lowest rates of land abandonment and high rates of grassland retention. The case study explores the functions of regulatory intervention and coordination, two of the regulatory functions advanced by this book’s CIRCle Framework of regulatory functions for addressing cumulative environmental problems. It investigates how a diverse set of regulatory interventions provides for maintaining and restoring grasslands in South Tyrol, and how diverse forms of coordination – links between areas of laws, coordinating institutions, and dispute resolution processes – facilitate implementation in a context of deep multilevel governance.
Australia’s World Heritage-listed Great Barrier Reef experiences cumulative impacts from diverse activities, including regional catchment-sourced water pollution and the impacts of climate change. Regulating these threats engages a wide range of laws for intervention, which have been influenced by a regulatory mechanism for information – a strategic environmental assessment (SEA) undertaken a decade ago at the request of UNESCO. This chapter explores how the strategic assessment and associated interventions influence impacts from two major activities that contribute to water pollution and climate change – cattle grazing and coal mining. It shows that regulatory SEA can provide for entrenching and integrating ongoing information collection, analysis, and sharing. Moreover, SEA can directly influence diverse regulatory interventions to address cumulative impacts. It can link the functions of information and intervention, two of the regulatory functions advanced by this book’s CIRCle Framework. At the same time, opportunities remain to build stronger links between interventions for water quality and climate adaptation, and between climate change mitigation interventions and the Reef context.
Outside of our fellow mammals, our next closest relatives are reptiles. As both birds and mammals are warm blooded (endothermic) and have four-chambered hearts, one might be tempted to think that the sister group to mammals would be birds. But the story is much more complicated than that, especially because birds are actually reptiles.
Reptiles include four main lineages: (1) turtles, (2) lizards and snakes, (3) crocodilians, and (4) dinosaurs, including birds. Indeed, birds are reptiles – birds are a surviving lineage descended from bipedal predatory dinosaurs! In decades past, there were five “classes” of vertebrates (animal groups with backbones): fishes, amphibians, mammals, reptiles, and birds. In fact, many basic treatments still list these groups. For example, Encyclopedia Britannica still has an article entitled: “Five Vertebrate Groups.” But there are major problems with two of these old groups: neither fishes nor scaly reptiles are monophyletic.
I have argued that one of the major misconceptions about evolution and the tree of life is that some species or lineages are considered more “primitive” than others – this chapter will delve more deeply into this misconception and one of its key causes. Across the tree of life, certain lineages – including the platypus, lungfishes, and mosses – are frequently labeled as more primitive than other members of their groups. Mammals provide several good case studies demonstrating the reasons for this longstanding misperception. Researchers, journalists, and filmmakers all seem obsessed with discussing certain lineages that somehow seem primitive to them. This misconception about primitive lineages is problematic for two major reasons. First, it leads to a general misunderstanding of evolution, which can lead to fundamental misunderstandings across all of biology, including human health.
Fossils provide a unique window into how evolution has unfolded. In particular, transitions in the fossil record provide compelling evidence for how major evolutionary changes have happened. One of the most well-known transitions is from fish-like vertebrates to the first land vertebrates – our earliest tetrapod ancestors. (The word tetrapod refers to the groups of vertebrates with four legs, namely mammals, reptiles, and amphibians.) Paleontologists had known that transitional fossils connecting aquatic and terrestrial vertebrates must exist. There were abundant fossils of vertebrates with fins from around 400 mya, and there were abundant fossils of terrestrial tetrapods with limbs from around 350 mya. But key fossils were missing – those that could show details of how the evolutionary crawl onto land had occurred.
If we think of ourselves as the “highest” forms of life, we often think of Bacteria as the “lowest” forms of life. We also think of Bacteria as ancient, “primitive,” and ancestral. As discussed for many other extant branches of the tree of life, these views are misleading. But these views may be especially hard to jettison when thinking of Bacteria – aren’t they more ancestral than we are? But we must always come back to this idea: Bacteria are not our ancestors – they are extant cousins. As will be detailed below, all lineages of organisms descended from the LUCA; the major lineages of life did not descend from Bacteria.
The clade Bacteria includes species that are ecologically essential (e.g., as decomposers that impact the carbon cycle) and that comprise key organisms of our microbiome (e.g., the symbiotic Bacteria normally found on our skin and in our digestive tracts). Bacteria also cause many diseases, including stomach ulcers (Helicobacter pylori), tetanus (Clostridium tetani), and acne (Cutibacterium acnes).
This chapter begins with the strong statement that fish do not exist as a true evolutionary group. Of the five traditional “classes” of vertebrates, fishes are the most problematic. The concept “fish” is wildly paraphyletic. In contrast, extant amphibians form a monophyletic clade. Mammals are also a true evolutionary group. In the previous chapter we learned that the former paraphyletic group Reptilia can be fixed by recognizing that birds are reptiles.
But there is no simple fix for fishes. One possible solution is to say that all tetrapods are fishes too. In other words, you and I and frogs and birds would all be fishes. That could work and it does reflect true evolutionary relationships, but it makes the former concept fishes fairly useless. Another solution is to recognize at least six separate lineages as distinct monophyletic groups.