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Although nudibranchs are common and attractive animals, our understanding of these marine gastropods in Vietnam remains limited. Prior research has suggested that combining morphological examination with molecular analysis results in more accurate identification of nudibranchs. However, previous studies in Vietnam have typically relied solely on morphological methods for nudibranch identification. In this study, the nudibranch species Halgerda batangas was recorded in Vietnam for the first time based on both morphological and molecular approaches. Halgerda batangas was characterized by a network pattern consisting of orange lines, relatively low dorsal tubercles with red-orange caps and white basal rings, and an orange line along the foot margin. Molecular analysis corroborated the morphological findings. These results suggest that integrating morphological and molecular methods is an effective approach for identifying nudibranchs.
Species of the family Echinostomatidae use diverse gastropod taxa as first intermediate hosts. However, identification of echinostomatid larvae often proves difficult because of incomplete information on their life cycles and lack of molecular data that can link larvae to the corresponding known adults. Here, echinostomatids that were isolated from freshwater limpets in South Africa were described using light and scanning electron microscopy, and ribosomal (28S, ITS, and 18S) and mitochondrial (cox1) DNA sequences. The analyses revealed three species: Petasiger radiatus, Petasiger sp., and Echinostomatidae gen. sp. Considering the close morphological resemblance between cercariae of Petasiger spp., the current species were compared with data from literature. The results showed that cercarial size is generally unsuitable for species discrimination. The numbers of flame cells and refractile granules in the excretory system, and penetration gland cell patterns, may indicate, but do not prove species identity. Although papillary patterns were distinct between species, papillae were clearly discernible only using scanning electron microscopy and are known for only a few species. Phylogenetic reconstruction indicated that 28S rDNA sequences of Petasiger on GenBank are for P. exaeretus, P. phalacrocoracis, P. radiatus, and six unnamed species. Furthermore, the results revealed that multiple ITS rDNA and cox1 sequences labelled as Stephanoprora amurensis and P. phalacrocoracis on GenBank, are from isolates whose identities are questionable. Echinostomatidae gen. sp. could not be assigned to any currently known genus. Expansion of the genetic database of the family Echinostomatidae is necessary for the delineation of putative species and elucidation of intergeneric relationships.
Meteterakis striatura Oshmarin & Demshin, 1972 is redescribed from the posterior intestine of tropical tortoise Geoemyda spengleri (Gmelin, 1789) (Testudines: Geoemydidae) from China. Some characteristic features of the male reproductive system not reported previously are now reported for the present species. These include the presence of two blind diverticula near the mid-region of the seminal vesicle and a small cuticular structure near the opening of the cloaca – which we propose to name the ‘scutum.’ The morphological function and diagnostic value of these characters as well as presence of gubernaculum or ‘gubernacular mass’ in examined representatives of the genus, including paratype specimens of M. amamiensis Hasegawa, 1990 and M. ishikawanae Hasegawa, 1987 is discussed. Illustrative material is supplemented with scanning electron microscope and light microscope images of adult males and females. The molecular characterization of the species is inferred from 18S and 28S rDNA. The taxonomic composition of the genus Meteterakis is discussed and the full list of species with taxonomic remarks is updated.
Continental drift of Baltica from the Tremadocian subpolar latitudes to subtropical latitudes in the Katian was the main factor controlling the succession of the Ordovician Baltic conodont communities. These faunas were gradually enriched during the Floian as a result of immigrations from the regions experiencing warmer climate. Reinterpretation of quantitative data in terms of population approach to fossil assemblages shows how some of these immigrants evolved anagenetically in place, changing their contribution to the secondary productivity of the ecosystem. The composition of the fauna became surprisingly uniform, at least since the numerical domination by the presumably indigenous Baltoniodus lineage was established during the Dapingian. Baltoniodus was supplemented by another indigenous lineage of Trapezognathus-Lenodus-Eoplacognathus, which continued its subordinate occurrence during the Darriwilian. The early Sandbian transgression resulted in immigration of the Amorphognathus lineage that emerged allopatrically in an unknown region but then began evolving anagenetically until the end of the Ordovician. Conodonts with coniform apparatus elements added complexity to the general picture of immigrations and disappearances, but only the lineage of Protopanderodus rectus seems to have differentiated geographically its contribution to the biological productivity. Several brief cooling and warming episodes did not result in any long-term transformations of the conodont communities. Most intriguing was the immigration of the Yaoxianognathus lineage that probably gave rise to all of the post-Ordovician ozarkodinids. By that time, Yaoxianognathus had its close relative in the tropical North American Midcontinent, but the source area was probably in the Darriwilian of the Argentinian part of Gondwana. Forms with thin P1 elements of basal cone walls, like Scabbardella or Hamarodus, are indicators of glacial Gondwanan influences. The lineage of Sagittodontina, associated with these in the Małopolska microcontinent (with Gondwanan affinities), was subordinate in Baltica until it had been influenced by the Hirnantian glaciation that ended the Baltic conodont fauna.
A new Iranian population of Lindseyus costatus is characterized, including morphometrics, microphotographs, and molecular (18S, 28S rDNA) studies. It is compared with previously known populations. The results derived from molecular analyses failed to find close evolutionary relationships with other traditional genera of Belondiridae and Swangeriinae, adding more uncertainties about the internal phylogeny of the family. The taxonomy of Lindseyus is revised, with a new diagnosis, list of species, key to their identification, and a compilation of their main morphometrics.
Amphalius spirataenius belongs to Arthropoda, Insecta, Siphonaptera, Ceratophylloidea, Ceratophyllinae, Amphalius. Only 2 species from the subfamily Ceratophyllinae have been sequenced for mitogenomes to date. The genus Amphalius mitogenome research was still blank. The A. spirataenius mitogenome was determined, annotated and analysed for the first time in this study. The 14 825 bp long genome has the typical metazoan of 37 genes with insect ancestral genome arrangement pattern. There was no significant difference in codon usage of 13 protein-coding genes: UUA, UCU, GUU, ACU and GCU were the most frequently used codons. It was found that the reason for codon preference mainly contributed to natural selection base on PR2, ENC-plot and neutrality curve analysis. Evolutionary rate, conserved sites, variable sites and nucleotide diversity analysis indicated that nad6 of A. spirataenius had the fastest evolutionary rate, while cox1 had the slowest evolutionary rate. Phylogenetic trees were reconstructed based on 13 protein-coding genes and 2 rRNA genes datasets using Bayesian inference and maximum likelihood method. The phylogenetic tree supported that both Siphonaptera and Mecoptera were monophyletic, and were sister groups to each other. This study filled gap of the genus Amphalius mitogenome sequences and was of great significance for understanding evolution of the order Siphonaptera.
Panulirus stimpsoni is restricted to southern China, Vietnam, and Japan but has been rarely reported in tropical Gulf of Thailand. In Malaysia, only six species were previously reported. This study (1) reports the seventh Malaysian species – a new record of P. stimpsoni with morphological and genetic data; (2) establishes a checklist of Malaysian Panulirus species. Surveys from 2021 to 2022 sampled lobsters across Malaysia by SCUBA or from fishermen. Seven species were identified and a modified key of Malaysian species was constructed. The COI gene was used for genetic identification and phylogenetic tree reconstruction with maximum likelihood (ML). The best model was GTR + I + G. The ML tree comprised Clades I and II with sequences clustering by species and strong support. Most Peninsular Malaysian lobsters were P. polyphagus while P. versicolor dominated Sabah. Information on P. stimpsoni's full fishery potential, distribution, ecology, and biology is limited. Further research is needed to ensure conservation and management as data are only available for six previously reported species. Further studies are required to discover sustainable use approaches for all Panulirus species, particularly P. stimpsoni, given limited ecological understanding.
The cyst nematodes, subfamily Heteroderinae, are plant pathogens of worldwide economic significance. A new cyst nematode of the genus Cactodera within the Heteroderinae, Cactodera xinanensis n. sp., was isolated from rhizospheres of crops in the Guizhou and Sichuan provinces of southwest China. The new species was characterized by having the cyst with a length/width = 1.3 ± 0.1 (1.1–1.6), a fenestral diameter of 28.1 ± 4.3 (21.3–38.7) μm, vulval denticles present; second-stage juvenile with stylet 21.5 ± 0.5 (20.3–22.6) μm long, tail 59.4 ± 2.0 (55.9–63.8) μm long and hyaline region 28.7 ± 2.7 (25.0–36.3) μm long, lateral field with four incisures; the eggshell with punctations. The new species can be differentiated from other species of Cactodera by a longer tail and hyaline region of second-stage juveniles. Phylogenetic relationships within populations and species of Cactodera are given based on the analysis of the internal transcribed spacer (ITS-rRNA), the large subunit of the nuclear ribosomal RNA (28S-rRNA) D2-D3 region and the partial cytochrome oxidase subunit I (COI) gene sequences here. The ITS-rRNA, 28S-rRNA and COI gene sequences clearly differentiated Cactodera xinanensis n. sp. from other species of Cactodera. A key and a morphological identification characteristic table for the species of Cactodera are included in the study.
A new species of bothriocephalid cestode in the genus Anantrum is described from the intestine of the shorthead lizardfish Synodus scituliceps from the north Pacific coast of Costa Rica. The new species is described based on an integrative taxonomic approach that includes the use of light and scanning electron microscopy, 28S rDNA sequencing, and phylogenetic analysis. Anantrum gallopintoi sp. nov. is the third known member of this genus and can be distinguished from A. tortum (Linton, 1905) and A. histocephalum Jensen & Heckmann, 1977 by a combination of morphological and ecological traits and, in particular, by having a vaginal sphincter, different number of testes, and different type host and type locality. The molecular analysis and the phylogenetic reconstructions supported its status as a new taxon placing it within a well-supported separate branch of Anantrum spp. subclade. According to the present finding, S. scituliceps represents a new host record and Costa Rica a new geographical record for Anantrum species, and, in general, for a bothriocephalid cestode.
Adults of the genus Posthodiplostomum, Dubois, 1936 are parasites of fish-eating birds, mainly of the family Ardeidae, and are globally distributed. The genus currently comprises 35 species, although recent molecular evidence has shown that the diversity of the genus is underestimated since several candidate species have been recognized. In the Neotropical region of Mexico, at least 6 Posthodiplostomum lineages have been detected with metacercaria stages recovered from unrelated fish hosts. Here, we obtained adult specimens of Posthodiplostomum from 6 fish-eating birds representing 2 families (Butorides virescens, Ardea herodias, Nycticorax nycticorax, Tigrisoma mexicanum – Ardeidae, and Rynchops niger and Leucophaeus atricilla – Lariidae) from 4 localities in southern Mexico. Specimens were sequenced for 2 nuclear (28S and ITS1–5.8S–ITS2) and 1 mitochondrial (cox1) molecular marker. Phylogenetic analyses allowed us to link metacercariae and adult specimens and recognized a lineage, which was described morphologically. The new species can be distinguished from its congeners by its prosoma morphology and body size; this is the first described species in the Neotropical region of Mexico. Additionally, new host and locality records for P. macrocotyle and P. pricei are presented, expanding their geographical distribution range in the Americas.
A new species of Myxobolidae, Henneguya cardii n. sp., is described infecting the European seabass Dicentrarchus labrax, a fish of high commercial value intensively cultivated in southern Europe. Henneguya cardii n. sp. was found in the bulbus arteriosus and spleen with a prevalence of infection of 13.5%. In the heart, it forms irregular whitish plasmodia measuring 1 mm in size. Mature myxospores are broadly obovoid in frontal view and ellipsoidal in lateral view, with 2 equal caudal appendages. Polar capsules are ovoid and symmetric, with 3–4 polar tubule coils. Myxospores measure 10.2 ± 0.6 (8.8–11.6) μm in length, 8.0 ± 0.7 (5.3–8.8) μm in width and 5.6 ± 0.2 (5.1–6.4) μm in thickness. Caudal appendages are 36.6 ± 3.2 (27.4–42.9) μm long. Total spore length is 47.6 ± 3.2 (41.2–53.2) μm. Polar capsules measure 4.0 ± 0.2 (3.4–4.6) by 2.2 ± 0.1 (1.9–2.6) μm. Small subunit ribosomal RNA-based tree topologies position H. cardii n. sp. within a lineage of marine myxobolids that is mostly comprised of other Henneguya species. Host-relatedness is reinforced as the main evolutionary driver for myxobolids, with the positioning of H. cardii n. sp. further suggesting tissue tropism as another important evolutionary driver for marine heart infecting Henneguya. Nonetheless, the inner complexity of this lineage suggests that identification of the evolutionary patterns driving its phylogeny will require discovery of the true diversity of marine myxobolids.
The diversity and health of insects that feed on plants are closely related to their mutualistic symbionts and host plants. These symbiotic partners significantly influence various metabolic activities in these insects. However, the symbiotic bacterial community of toxic plant feeders still needs further characterisation. This study aims to unravel bacterial communities associated with the different species of insect representing three insect orders: Thysanoptera, Hemiptera, and Lepidoptera, along with their predicted functional role, which exclusively feeds on latex-rich plant species Ficus microcarpa. By using 16S rRNA gene high-throughput sequencing, the analysis was able to define the major alignment of the bacterial population, primarily comprising Proteobacteria, Firmicutes, Bacteroidota, Actinobacteriota, and Acidobacteriota. Significant differences in symbiotic organisms between three insect groups were discovered by the study: hemipterans had Burkholderia and Buchnera, and lepidopterans had Acinetobacter. At the same time, Pseudomonas was detected in high abundance in both lepidopteran and thysanopteran insects. Furthermore, these symbionts exhibit consistent core functions, potentially explaining how different insects can consume the same host plant. The identified core functions of symbionts open avenues for innovative approaches in utilising these relationships to develop environment-friendly solutions for pest control, with broader implications for agriculture and environmental conservation.
Toxocara vitulorum is one of the deadliest parasite of buffalo calves in Bangladesh. This study was conducted to explore genetic variability within and among the T. vitulorum populations in buffalo calves of Bangladesh. Genomic DNA was extracted, ITS2, COX1 and NAD1 gene were amplified and sequenced. Distinct 29 ITS2, 21 unique NAD1 and 24 COX1 genotypes were detected among the T. vitulorum of different geographic regions. These three gene genotypes similarities ranged from 97 to 99%, when these were compared to best hit scoring T. vitulorum sequences retrieved from GenBank. A total of 12 and 6 unique haplotypes were detected for COX1 and NAD1 gene sequences. The average nucleotide and haplotype diversity for COX1 and NAD1 were 0.0931 & 0.89493 and 0.00658 & 0.77895 respectively and the recorded values were more dispersed than previously published values. The pairwise Nst values ranged from −0.050 to 0.602 and Fst from −0.050 to 0.600 between all the T. vitulorum genotypes indicated huge genetic differentiation which were reportedly higher than other published reports Fst values. This is the first report of T. vitulorum on the basis of COX1 gene in Bangladesh. The study findings will be helpful for further extensive epidemiological studies regarding anthelmintic resistance, control and prevention of T. vitulorum infection in buffalo calves.
Schrankiana are gastrointestinal parasites of anurans, distributed throughout Central and South America. Schrankiana formosula and Schrankiana inconspicata are some of the most commonly reported species parasitising anurans from Brazil, and the morphological differences between them are unclear. In the present study, we redescribed S. formosula based on a re-examination of type series and newly collected material from the frog Leptodactylus pentadactylus in the state of Amapá, Brazil. Additionally, we re-examined the type series of S. inconspicata, and propose it as a junior synonym of S. formosula. We provide detailed morphological and morphometric data with intraspecific variation analyses and new molecular data for S. formosula. In the present phylogeny, S. formosula formed a well-supported clade with Raillietnema sp. and Labeonema synodontisi. Based on molecular phylogenetic analyses and some morphological similarities, our findings support the hypothesis that Schrankiana is a member of the family Cosmocercidae, not Atractidae. Additionally, we provide the first ultrastructural descriptions of S. formosula, and establish the species' phylogenetic position from the Cosmocercidae.
During investigation of common linnet (Linaria cannabina) blood using the buffy coat method one bird with microfilariae in the blood was found. The morphometric description of adult worms corresponded to the Chandlerella sinensis. This species was found for the first time in common linnets. DNA sequences of cox1 and 28S gene fragments of adult worm recovered during necropsy was identical to that from the microfilariae in the bird blood. Phylogenetic analysis of the cox1 gene fragment clustered this parasite with Chandlerella quiscali. Histological examination revealed the presence of microfilariae in the lumen of small capillaries and other blood vessels in different organs, but no inflammations were notice. The greatest number of microfilariae was in the lungs. Even if there was no inflammation, but vessels associated with the lungs were markedly distended with blood, parabronchial walls were thickened and, in some cases, almost completely obstructing the lumen. The large number of microfilariae in lungs indicates possible disturbance of gas exchange in the lungs adversely affected the ability of the bird to exercise and made breathing difficult at rest. The investigation of circadian rhythm of the microfilariae showed that C. sinensis microfilariae in blood of common linnet were more numerous at night and morning and less numerous at midday. The survival rate of mosquitoes infected with C. sinensis microfilariae was significantly lower than that of uninfected mosquitoes.
A lichenicolous species, Calicium ramboldiicola, growing on Ramboldia elabens is described. In phylogenetic analyses with 22 Calicium taxa, based on 121 sequences from five DNA regions (mtSSU, Mcm7, nuITS, nuLSU, β-tubulin), the new species formed a strongly supported clade with C. abietinum and C. verrucosum. Although the ascomata of the new species resemble miniatures of those of C. abietinum, no morphological synapomorphies for this clade were found. Calicium ramboldiicola is known from boreal and hemiboreal areas of northern Europe and north-eastern North America. It is the second known lichenicolous species of Calicium and the first found on a lichen in the Lecanorales.
We present a robust, five-locus phylogeny of the Megasporaceae and, based on this, propose several taxonomic innovations. The new genus Antidea is erected for Aspicilia brucei, which occupies a position near the base of the phylogeny, and the new species Aspicilia indeterminata and A. suavis are described from Montana. We also show that all North American (and some European) records of Aspilidea myrinii are misidentifications with many representing a second species in the genus, differing from A. myrinii by having elevated apothecia and narrower ascospores and for which we make the new combination Aspilidea subadunans. Finally, we make the new combinations Lobothallia determinata and L. peltastictoides, and report the lichenicolous fungus Sagediopsis aspiciliae (on A. subadunans) as new to North America.
Cladonia sandstedei forms cushion-shaped lichens that colonize open environments and is distributed throughout the Caribbean and the south-eastern United States. It co-occurs in parts of its range with C. subtenuis, a morphologically similar taxon that is distinguished from the former by the presence of usnic acid. Preliminary phylogenetic analysis with the RPB2 and TEF-1α loci revealed that these taxa were closely related, but relationships were inconsistent among markers. Here, we combined phylogenetic and population genomic analyses based on RADseq data to clarify the evolutionary relationships and phylogeography of these taxa. Both approaches indicate that the taxa cannot be separated based on secondary metabolites, as previously proposed, but instead form a complex composed of several lineages, largely unrelated to chemistry but with a strong geographical structure in their genetic variation. Continental populations formerly separated under the names C. sandstedei and C. subtenuis were closely related to each other. A similar pattern was observed in the Jamaican counterparts of these taxa, suggesting homoplasy of secondary chemistry. Discriminant Analysis of Principal Components (DAPC) hinted at potential conspecificity between populations in Cuba and Puerto Rico on one hand, and between Jamaica and the continental US on the other; however, phylogenetic analysis and other population-level analyses (PCA and fineRADstructure) suggested that both insular and continental populations were more likely to be reproductively isolated from each other. Based on this, we propose to recognize only one species for the entire complex, under the older name C. sandstedei, with the four spatially structured clades as subspecies: C. sandstedei subsp. sandstedei (restricted to Jamaica) and C. sandstedei subsp. subtenuis comb. nov. (restricted to continental North America) exhibit several chemosyndromes variably containing usnic acid and/or atranorin. The two additional subspecies described here as new, C. sandstedei subsp. cubana and C. sandstedei subsp. landroniana, exhibit the atranorin chemosyndrome and are restricted to Cuba and Puerto Rico, respectively. Our work reaffirms the power of combining RADseq-based phylogenetics and population genetics to disentangle taxonomic and evolutionary histories in poorly understood, closely related and phenotypically similar lichen-forming fungal species.
Island biogeography theory views island species richness as an equilibrium of extinction rates and the immigration rates of novel species to an island. At equilibrium, MacArthur and Wilson’s model predicts that species composition will change over time, but species richness will remain relatively stable. In addition, large islands with low extinction rates and high immigration rates will tend to support more species than will small islands. Geographic ecologists also want to understand why particular species or groups of species have a particular geographic distribution. The theories of continental drift and plate tectonics have helped to resolve these questions. More recently, developments in molecular technology have allowed biogeographers to answer numerous questions about species distributions. Landscape ecology explores how variation in landscape structure, such as configuration or scale, influences the distribution and abundance of species. Conservation ecologists are particularly concerned that industrial, agricultural, and urban development have led to increased fragmentation of habitat that is suitable for sustainable wildlife populations. Applying the lessons of island biogeography, ecologists recommend erecting immigration corridors to increase immigration rates of novel species into nature preserves, thereby increasing species richness.
Threespine sticklebacks, numerous species of disease-causing bacteria, and Darwin’s finches have all shown rapid evolutionary change in response to changing environments. Evolutionary ecologists use a variety of genetic and molecular approaches to study evolutionary change in these and other species. Gene flow, genetic drift, mutation, and natural selection can cause evolutionary change within a population, but natural selection is the only evolutionary process that can lead to adaptation. The benefits and costs of adaptations are environment-dependent and reflect evolutionary tradeoffs, so a trait may be beneficial in one environmental context and costly in a second. Natural selection may lead to speciation when genetic divergence is maintained either by physical barriers to gene flow, or by assortative mating of similar genotypes within a population. Evolutionary ecologists compare morphological, behavioral, and, most commonly, molecular characters in related groups of organisms, and use similarities in these characters to create phylogenetic trees that reflect evolutionary relationships.