This study investigates how the consumption of interesterified palm oil (IPO) affects the metabolic and morphological features of brown adipose tissue (BAT) in C57BL/6 mice fed a high-fat diet (HFD). Mice were divided into four groups: control, HFD (lard), HFD with palm oil (PO; HFP), and HFD with IPO (HFI). The HFP and HFI groups exhibited significant body weight gain, increased fat mass, and impaired glucose metabolism. Histological analyses revealed lipid infiltration in BAT, leading to structural remodeling from multilocular to unilocular adipocytes, hallmark features of the whitening process. This morphological shift was accompanied by reduced nuclear density and impaired vascularization. Gene expression analysis indicated downregulation of key thermogenic markers, including Ucp1, Pparγ, and Prdm16, especially in the HFI group. Increased expression of endoplasmic reticulum (ER) stress markers such as Chop and Atf4, and inflammatory cytokines (Tnfα and Il6), highlighted the pro-inflammatory and pro-apoptotic microenvironment induced by PO and IPO. These changes culminated in a loss of BAT thermogenic capacity, as evidenced by decreased UCP1 protein levels and impaired adaptive thermogenesis. Our findings underscore the detrimental effects of palm oil, mainly IPO, on BAT functionality, exacerbating obesity-related metabolic dysfunctions such as insulin resistance and glucose intolerance. The results emphasize the need for caution in the dietary use of these fats, particularly in ultra-processed food formulations, given their potential role in promoting adipose tissue remodeling and metabolic imbalances.