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Active duplicate PgiC genes in sheep's fescue, Festuca ovina, are associated with a PCR marker of specific length (about 370 bp, of which 231 are in an intron). Using this marker, the frequency of plants with duplicate genes is estimated to be about 10% in a population from southern Sweden. The close molecular similarity between the electrophoretically different duplicated genes is in accordance with the conclusion reached earlier that they are indeed alleles at the same locus.
Thirteen linear wing dimensions were measured in 10 isofemale lines of Drosophila melanogaster and D. simulans grown at seven constant temperatures from 12 to 31 °C. Within-line (environmental) variability, estimated by the within-line coefficient of variation (CVw), exhibited similar variation patterns in the two species, that is higher values at extreme (low or high) temperatures. The magnitude of variation was, however, greater in D. simulans, which appears to be more responsive to thermal change. A clear hyperbolic relationship between trait mean value and CVw was also observed in both species, arising from measurement errors which are relatively more pronounced on shorter traits. Genetic variability was analysed by considering both the genetic CV (CVg, evolvability) and isofemale line heritability (intraclass correlation). Both parameters provided independent information, as shown by a lack of correlation between them. Moreover, CVg was negatively correlated with trait mean value, while heritability showed a positive correlation. With respect to thermal environment, both parameters exhibited similar reaction patterns which contrasted the two species. Genetic variability in D. melanogaster followed a convex reaction norm, with higher values at extreme (high or low) temperatures, and this observation agrees with previous independent investigations. Surprisingly, D. simulans revealed an opposite pattern, with a maximum genetic variability in the middle of the range. Such data point to the danger of drawing general conclusions from the analysis of a single species.
A generalized interval mapping (GIM) method to map quantitative trait loci (QTL) for binary polygenic traits in a multi-family half-sib design is developed based on threshold theory and implemented using a Newton–Raphson algorithm. Statistical power and bias of QTL mapping for binary traits by GIM is compared with linear regression interval mapping (RIM) using simulation. Data on 20 paternal half-sib families were simulated with two genetic markers that bracketed an additive QTL. Data simulated and analysed were: (1) data on the underlying normally distributed liability (NDL) scale, (2) binary data created by truncating NDL data based on three thresholds yielding data sets with three different incidences, and (3) NDL data with polygenic and QTL effects reduced by a proportion equal to the ratio of the heritabilities on the binary versus NDL scale (reduced-NDL). Binary data were simulated with and without systematic environmental (herd) effects in an unbalanced design. GIM and RIM gave similar power to detect the QTL and similar estimates of QTL location, effects and variances. Presence of fixed effects caused differences in bias between RIM and GIM, where GIM showed smaller bias which was affected less by incidence. The original NDL data had higher power and lower bias in QTL parameter estimates than binary and reduced-NDL data. RIM for reduced-NDL and binary data gave similar power and estimates of QTL parameters, indicating that the impact of the binary nature of data on QTL analysis is equivalent to its impact on heritability.
This paper uses data from the Human Gene Mutation Database to contrast two hypotheses for the origin of short DNA repeats: substitutions and insertions that duplicate adjacent sequences. Because substitutions are much more common than insertions, they are the dominant source of new 2-repeat loci. Insertions are rarer, but over 70% of the 2–4 base insertion mutations are duplications of adjacent sequences, and over half of these generate new repeat regions. Insertions contribute fewer new repeat loci than substitutions, but their relative importance increases rapidly with repeat number so that all new 4–5-repeat mutations come from insertions, as do all 3-repeat mutations of tetranucleotide repeats. This suggests that the process of repeat duplication that dominates microsatellite evolution at high repeat numbers is also important very early in microsatellite evolution. This result sheds light on the puzzle of the origin of short tandem repeats. It also suggests that most short insertion mutations derive from a slippage-like process during replication.
Microsatellite mutations were studied in a set of 175 mutation accumulation lines, all of them independently derived from a completely homozygous population of Drosophila melanogaster and maintained under strong inbreeding during 80 generations. We assayed 28 microsatellites and detected two mutations. One mutation consisted of a single addition of a dinucleotide repeat and the other was a deletion of five trinucleotide repeats. The average mutation rate was 5·1 × 10−6, in full agreement with previous estimates from two different sets of mutation accumulation lines.
We analysed the pattern of expression of retrotransposon 412 through developmental stages in various populations of Drosophila simulans and D. melanogaster differing in 412 copy number. We found that the 412 expression pattern varied greatly between populations of both species, indicating that such patterns were not entirely species-specific. In D. simulans, total transcripts increased with number of 412 copies in the chromosomes when this number was low, and then decreased for high copy numbers. D. melanogaster, which has a higher 412 copy number than D. simulans, had overall a lower global 412 expression, but again showed variation in 412 expression pattern between populations. These results suggest that in populations of D. simulans with low 412 copy number, the expression pattern of this element depends not only on copy number but also on host cellular regulatory sequences near which the elements were inserted. In D. simulans populations with high copy number overall transcription was on the contrary globally repressed, as observed in D. melanogaster. A population from Canberra (Australia) which had a very high 412 copy number was found to be associated with very high expression of 412 over all developmental stages, suggesting that the above 412 expression regulation processes are overcome in this population sample. The analysis of hybrids between geographically distinct populations of D. simulans showed that 412 expression was trans-regulated differently according to developmental stages, implying complex interactions between the 412 element and stage-specific host genes.
Chemical treatments with cytochalasin B were used to induce triploidy in the progeny of a mass fertilization of 3 male and 7 female Crassostrea gigas parents. Triploids were produced either by retention of the first (meiosis I (MI) triploids) or the second (meiosis II (MII) triploids) polar bodies. These animals, together with their diploid siblings, were divided for two experiments. One set was used to compare physiological performance, and the other set deployed to compare growth in two different natural environments. For both experiments, genetic variability in different ploidy classes was estimated using three microsatellite loci and eight allozyme loci. The microsatellite loci were highly polymorphic, allowing independent confirmation of ploidy status and the unambiguous identification of parentage for each oyster. Significant differences in parentage were found between ploidy classes, despite the fact they originated from the same mass fertilization. This indicates that the assumptions of a common genetic background among random samples of animals taken from the same mass fertilization may not be generally valid. Knowledge of parentage also allowed the more accurate scoring of allozyme loci. As expected, triploids were found to be significantly more polymorphic than diploids. However, MI triploids were not significantly more polymorphic than MII triploids. MII triploid genotypes were used to estimate recombination rates between loci and their centromeres. These rates varied between 0·29 and 0·71, indicating only moderate chiasma interference.
Parental care in birds and mammals is so familiar to all of us that it seems unlikely that it can hold any fresh surprises or offer any new insights. However, there are important aspects of parental care that are commonly overlooked when its role in evolution is discussed. Parental care is one of the major routes through which information is transferred across generations. It is largely through the effects of parental care that animal traditions become established. The information transmitted through parental care relates to all the aspects of life; some is used everyday, some only rarely. Information is transmitted through several different but usually interacting channels, and is essential for the survival and reproduction of the offspring. A look at some typical parental behaviour, that of the common domestic mouse, will show the remarkable range and importance of the information that is transmitted from parent to offspring.
Dusk is a good feeding time for village mice. The small, four-month-old, greyishbrown female domestic mouse silently scales the outer wall of the village grocer's warehouse. She enters the warehouse through a small crack in the wall, and quickly slides down to the piles of bags containing pinhead oatmeal and canary seed. This urine-marked route leads safely to the best source of solid food around. It was first introduced to her by her mother, three months ago, and has been used by her ever since, at least twice a day, at dawn and dusk. […]
To understand how traditions originate and how they evolve, we must first establish the relationship between learning, memory and social organisation. Not everything that is learnt becomes a habit, not every habit involves social interactions and not every social habit is transmitted across generations. We therefore need to know what learning entails, how patterns of behaviour are memorised and how they lead to the formation of traditions. Our purpose is not to describe the neural mechanisms of learning and memory, but rather to outline the psychological, ecological and social conditions that influence how behaviour patterns are generated, remembered and transmitted. ‘Learning’ and ‘remembering’ are not simple and unitary processes, however: different species rely to varying extents on several types of learning and memory. This affects the nature of the habits they develop, and whether or not and in what manner these habits form cultural traditions. To get a better understanding of the different types of learning and their consequences, we will return again to the Judaean hills and observe the behaviour of some of their inhabitants.
It is late spring, and the dry shrubland of the Judaean hills, with its small oak trees dotted among scattered low bushes and wild herbs, is swarming with life. As the daylight fades away, a female orb-web spider, suspended in mid-air on a thin thread stretched between two flowering bushes, is busy constructing her orb-web. Seed-collecting harvester ants move hurriedly along well-trodden earth roads to and from a nearby underground nest. […]
This book is about the way in which the evolution of birds and mammals is affected by social learning and by the traditions formed by social learning. From observation and experiment, we know that higher animals can acquire information from or through the behaviour of others, and through their own behaviour they can transmit this information to the next generation. Variations in such socially acquired and transmitted behaviour-influencing information cannot be under direct genetic control, since animals with very similar genes can have, and pass on, very different behaviours and traditions. There is clearly another inheritance system, a behavioural system of information transmission, which is superimposed on the genetic system. Some years ago we decided that the evolutionary consequences of this additional tier of variation and inheritance were worth exploring, and set out to see how our view of the evolution of higher animals is altered by incorporating non-genetic behavioural inheritance and the traditions that it produces. This book is the outcome of that endeavour.
We found that adding the behavioural system of information transmission has some radical implications for the current gene-centred view of evolution. For example, the classical distinctions between development and evolution become very blurred. An animal tradition is the product of a historical, evolutionary process, yet it can be formed and transmitted only if it is actively constructed during the behavioural development of individuals and groups.
If you ask a biologist to explain the evolution of the elaborate morning song of a great tit, the subtle food preferences of a domestic mouse, or the efficient hunting techniques of a pack of wolves, what sort of explanation will you get? The chances are you will be told that this type of behaviour can readily be explained by the conventional theory of natural selection acting on genetic differences between individuals. Ever since Darwin, the theory of natural selection has been applied to all sorts of biological problems, from the origin of life to the origin of language, and for most of this century it has been assumed that genetic differences between individuals underlie the variation on which natural selection acts. It is not surprising, therefore, that behavioural evolution is also seen as the outcome of the selection of genetic variations. But is this view correct? In this book we are going to argue that when applied to the behaviour of higher animals, conventional evolutionary theory is rarely adequate and is often misleading. Natural selection acting on genetic differences between individuals is not a sufficient explanation for the evolution of the behaviour of the great tit, the mouse or the wolf.
To understand why we are not satisfied with the current application of Darwin's theory to behaviour, we need to go back to basics. Darwin's theory depends on some fundamental properties of biological entities: on their ability to reproduce, on the differences between individuals and on the heritable nature of some of these differences.
In The Descent of Man and The Expression of the Emotions in Man and Animals, Darwin argues for evolutionary continuity between the minds of man and higher animals, stressing that higher animals share with us many complex mental capacities:
the difference in mind between man and the higher animals, great as it is, is certainly one of degree and not of kind. We have seen that the senses and intuitions, the various emotions and faculties, such as love, memory, attention, curiosity, imitation, reason, &c., of which man boasts, may be found in an incipient, or even sometimes a well-developed condition, in lower animals.
(Darwin, 1871, p. 105)
In one form or another, the continuity thesis is accepted by all evolutionary biologists. Even when a large mental gap between the minds of animals and man is recognised, the interpretation of this gap is based on the assumption that there is an underlying genetic and evolutionary continuity. However, notice how Darwin framed his statement: he did not claim that we are psychologically and cognitively simpler than we believe we are – that we are psychologically more like ‘lower’ animals. On the contrary, Darwin believed that ‘lower’ animals are more complex than is usually thought – that they are more similar to us, possessing more sophisticated capacities than we usually grant them.
In this book, we have followed Darwin's approach, emphasising the learning capacities of higher animals, particularly their ability to learn from others.
Up to this point, we have concentrated on social learning and its consequences in nuclear and extended families, where information is transferred between mates, between biological or adoptive parents and their offspring, between helpers and those they help, and among sibs. We now want to widen our discussion to see what goes on in those species of birds and mammals that are highly social, living in more or less permanent groups composed of both related and unrelated individuals. Our aim in this chapter is not to carry out an extensive review of the social group-life of birds and mammals. Rather, we want to look at some aspects of behaviour and psychology that throw light on the formation and maintenance of group traditions, and see how these group traditions themselves influence, directly or indirectly, the evolutionary development of social behaviour. We shall show how the various psychological mechanisms that serve to organise and co-ordinate the activities of a group depend on a constant flow of information among its members. This flow of information is mediated through social learning and maintained by frequent social interactions.
Before starting this discussion, we want to take a close look at the real-life intricacies of a group-living social mammal. So, imagine a cloudless day in January, in the Kalahari desert of south-west Africa, where we are watching the activities of meerkats, the social mongooses that live in small groups on the dry, open plain along the Nossob river.
According to the Bible, the Lord commanded Moses to tell his people ‘Thou shalt love thy neighbour as thyself.’ Regrettably, most of us fall short of this high moral standard: the interests of friends and neighbours are usually not as close to our heart as our own interests. Although human beings often co-operate with each other, strikingly altruistic acts are far from being the rule. When we do encounter them, we tend to regard them with surprise, admiration and sometimes even with contempt, indicating that these acts are seen as something exceptional. Impressively altruistic acts, especially those that are not directed towards close relatives, are often thought of as biologically ‘unnatural’ – the result of ideals imposed on us by custom, law or God, or else the unfortunate outcome of some miscalculation. Biologists have therefore been extremely puzzled by the observation that many birds, mammals and even insects perform what seem like acts of self-sacrifice. They take risks by warning others of lurking predators; they fight, sometimes to the death, to protect other individuals; and they take upon themselves the onerous chore of caring for the young of others. In several hundred species of birds and mammals, from bee-eaters and kingfishers to jays and woodpeckers, from voles and mongooses to bats and marmosets, parents are helped to rear their offspring by other individuals who seem to surrender, at least temporarily, their own reproductive rights and opportunities, and become ‘helpers’.