How do succession and the microhabitat interact to shape the mosaic of biocrust types in the Tabernas Desert (semi-arid Southeast Spain)? We hypothesize that succession (in human time scales) occurs only where the habitat allows it and can regress. Reviewing results from an extensive body of research conducted at the Tabernas region, we aimed (i) to show that crust types can be considered successional stages, (ii) to propose a succession model. We used two approaches: (a) direct, in situ monitoring of three sites (13, 17 and 11 years) and examination of unaltered micro-profiles of biocrusted soil; and (b) indirect assessment, by reviewing functional properties (e.g., ecohydrology, soil loss, physical–chemical properties, microbiota and gas exchange) of biocrust types hypothetically considered successional stages. Although differences among communities in these functions do not necessarily imply species replacement, they were consistent with the hypothetical successional order and the evidence of replacement from the direct approaches. Succession occurs at various speeds across space because it is controlled by habitat. Therefore, it is mainly observable in favourable habitats where the biocrust was altered, or in ecotones. We propose a succession model, including microclimatic controls, two early cyanobacterial stages and two later lichen stages, showing the regressive paths.