Parasitic nematodes within Onchocercidae are a diverse group transmitted by hematophagous arthropods. This study investigated the molecular occurrence of filarioid nematodes in 93 wild mammals from the Amazon, Cerrado and Pantanal biomes in Brazil, based on the analysis of the mitochondrial genes 12S ribosomal DNA gene (12S rDNA) and cytochrome c oxidase subunit I gene (COI). Conventional polymerase chain reaction (cPCR) targeting the 12S rDNA gene yielded positive results in 14·44% (13/93) of the samples, including 9·86% of jaguars (7/71), 50% of pumas (1/2), 12·5% of giant anteaters (1/8), 50% of ocelots (1/2) and 60% of crab-eating foxes (3/5). Among the 12S-positive samples, 46% (6/13) also tested positive for the COI gene; however, only 1 sequence was suitable for further analysis. Phylogenetic analyses based on 12S gene sequences revealed 4 distinct lineages within the family Onchocercidae. Groups Ia and Ib, composed of Cerrado and Pantanal sequences from jaguars, formed sister clades to Brugia pahangi and Malayfilaria sofiani, respectively. The sequence from the giant anteater (Group Ic) was more divergent, forming a sister clade to species of the genera Malayfilaria, Wuchereria, and Brugia. Group II included sequences closely related to Dirofilaria immitis and D. striata, encompassing samples from crab-eating foxes, ocelots and a puma. These findings suggest that several wild mammal species may serve as reservoirs for previously uncharacterized Onchocercidae nematodes. Our findings expand the existing knowledge on host associations of filarioid nematodes infecting wild mammals from the Pantanal, the Cerrado and the Amazon Rainforest.

Genome projects for the parasitic helminths Brugia malayi (a representative filarial nematode) and Schistosoma were initiated in 1995 by the World Health Organization with the ultimate objectives of identifying new vaccine candidates and drug targets and of developing low resolution genome maps. Because no genetic maps are available, and very few genes have been characterized from either parasite group, the first goal of both Initiatives has been to catalogue new genes for future placement on chromosome and physical maps. These genes have been identified by the expressed sequence tag (EST) approach, utilising cDNA libraries constructed from diverse life cycle stages. To date, the Initiatives have deposited over 16000 Brugia ESTs and nearly 8000 Schistosoma ESTs in Genbank's dbEST database, corresponding to 6000 and over 3600 genes respectively (33% of Brugia's estimated gene compliment, 18–24% of that of Schistosoma). Large fragment, genomic libraries have been constructed in BAC and YAC vectors for studies of genomic organization and for physical and chromosome mapping, and public, hypertext genomic databases have been established to facilitate data access. We present a summary of progress within the helminth genome initiatives and give several examples of important gene discoveries and future applications of these data.