Hostname: page-component-76c49bb84f-229nc Total loading time: 0 Render date: 2025-07-01T11:03:21.746Z Has data issue: false hasContentIssue false

A first report of the detection of Avipoxvirus genomic sequences in louse flies (Diptera: Hippoboscidae)

Published online by Cambridge University Press:  22 April 2025

Denise Wawman*
Affiliation:
Edward Grey Institute of Field Ornithology, Department of Biology, University of Oxford, Oxford, UK
Ben P. Jones
Affiliation:
Vector-Borne Disease Workgroup, Virology Department, Animal and Plant Health Agency, Addlestone, UK
Steven R. Fiddaman
Affiliation:
Department of Biology, University of Oxford, Oxford, UK
Jane E. Turner
Affiliation:
Independent Researcher, Wirral Peninsula, UK
Nicholas Johnson
Affiliation:
Vector-Borne Disease Workgroup, Virology Department, Animal and Plant Health Agency, Addlestone, UK Faculty of Health and Medical Sciences, University of Surrey, Guildford, SRY, UK
Adrian L. Smith
Affiliation:
Department of Biology, University of Oxford, Oxford, UK
*
Corresponding author: Denise Wawman; Email: denise.wawman@biology.ox.ac.uk

Abstract

The Hippoboscidae are ectoparasites of birds and mammals, which, as a group, are known to vector multiple diseases. Avipoxvirus (APV) is mechanically vectored by various arthropods and causes seasonal disease in wild birds in the United Kingdom (UK). Signs of APV and the presence of louse flies (Hippoboscidae) on Dunnocks Prunella modularis were recorded over a 16·5-year period in a rural garden in Somerset, UK. Louse flies collected from this site and other sites in England were tested for the presence of APV DNA and RNA sequences. Louse flies on Dunnocks were seen to peak seasonally three weeks prior to the peak of APV lesions, an interval consistent with the previously estimated incubation period of APV in Dunnocks. APV DNA was detected on 13/25 louse flies, Ornithomya avicularia and Ornithomya fringillina, taken from Dunnocks, both with and without lesions consistent with APV, at multiple sites in England. Collectively these data support the premise that louse flies may vector APV. The detection of APV in louse flies, from apparently healthy birds, and from sites where disease has not been observed in any host species, suggests that the Hippoboscidae could provide a non-invasive and relatively cheap method of monitoring avian diseases. This could provide advanced warnings of disease, including zoonoses, before they become clinically apparent.

Information

Type
Research Article
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© The Author(s), 2025. Published by Cambridge University Press.

Introduction

The Diptera in the family Hippoboscidae are related to the Tsetse flies, and both sexes are obligate haematophagous ectoparasites. There are over 200 species worldwide (Dick, Reference Dick2018) of which 11 species breed in the United Kingdom (UK), 3 on mammals (keds) and 8, louse or flat flies, on birds (Hutson, Reference Hutson1984; Wawman, Reference Wawman2024).

Some species of louse fly are proven vectors of various pathogens and others have been isolated from them without formal proof that these flies are acting as vectors (Bezerra-Santos and Otranto, Reference Bezerra-Santos and Otranto2020). Ornithomya avicularia and Pseudolynchia canariensis are proven biological vectors of Haemoproteus sp. (Baker, Reference Baker1963; Cepeda et al., Reference Cepeda2019), and trypanosomes have been shown to develop within the midgut of O. avicularia, and to reach the infective stage, but transmission only occurs when birds ingest the flies (Baker, Reference Baker1967). For most other pathogens, the evidence that louse flies are acting as vectors is weaker: West Nile Virus (WNV) was detected in Icosta americana from WNV infected raptors (Farajollahi et al., Reference Farajollahi, Crans and Nickerson2005); Crataerina melbae was proposed as a vector of trypanosomes in Alpine Swifts Tachymarptis melba (Cigler et al., Reference Cigler2024); an unidentified Hippoboscid was suggested as a potential vector when found in association with Newcastle Disease Virus infected Laughing Doves Streptopelia senegalensis (Obanda et al., Reference Obanda, Michuki and Jowers2016). Pathogens have also been identified in louse flies taken from birds without documented signs of disease, including Babesia spp. from O. avicularia and O. biloba (Čisovská Bazsalovicsová et al., Reference Čisovská Bazsalovicsová2023), Rickettsia sp. from Crataerina pallida (Cerutti et al., Reference Cerutti2018), and trypanosomes from O. biloba, O. fringillina and Ornithoica turdi (Santolíková et al., Reference Santolíková, Brzoňová and Čepička2022).

Avipoxvirus (APV) is a genus of double-stranded DNA viruses within the Chordopoxvirinae subfamily and Poxviridae family (ICTV, 2024). The most studied member of the genus is fowlpox virus, a cause of disease in domestic poultry (Van Riper and Forrester, Reference Van Riper, Forrester, Thomas, Hunter and Atkinson2007; Yeo et al., Reference Yeo, Wang and Chong2019). Other members of the genus cause disease in wild avian species, which is characterised by proliferative lesions on the skin, feet and legs, head and sometimes on the mucus membranes. APV is mechanically vectored by a range of arthropods, including Aedes and Culex mosquitoes (Kligler et al., Reference Kligler, Muckenfuss and Rivers1929), midges (Lee et al., Reference Lee, Koo and Kim2017), fleas (Smits et al., Reference Smits, Tella and Carrete2005), the mite Dermanyssus gallinae (Shirinov et al., Reference Shirinov, Ibragimova and Misirov1972; Huong et al., Reference Huong, Murano and UNO2014) and Stable Flies Stomoxys calcitrans (Alehegn et al., Reference Alehegn, Chanie and Mengesha2014). APV remains viable on the proboscis of Culex tarsalis for up to 28 days (DaMassa, Reference DaMassa1966). In temperate regions of the world APV is a seasonal disease where vectors are not active during the winter (Wawman et al., unpublished results; Van Riper and Forrester, Reference Van Riper, Forrester, Thomas, Hunter and Atkinson2007; Lachish et al., Reference Lachish, Lawson and Cunningham2012).

The Dunnock Prunella modularis is a small passerine that is native across Europe. It was first reported with APV lesions in the UK in the 1940’s (Edwards, Reference Edwards1955). It is affected by APV with a seasonal peak in August following an absence of disease in May and June (Wawman et al., unpublished results) which correlates with the seasonal peaks in vectors such as mosquitoes (Cull et al., Reference Cull2024). Three species of Hippoboscid have been found on UK Dunnocks, O. avicularia, O. fringillina and O. chloropus (Wawman, Smith and Sheldon, unpublished results; Hill, Reference Hill1962) and their peaks in populations occur seasonally at the time of year which might potentially allow them to be vectors of APV in Dunnocks (Wawman, Reference Wawman2025). This is particularly true when the estimated incubation period, which varies from 13 to 48 days in Dunnocks (Wawman et al., unpublished results), is taken into consideration.

In this study we combine knowledge of the seasonality of APV and Hippoboscids on Dunnocks, with molecular techniques to detect APV in association with Ornithomya spp. We also consider whether louse flies and keds could be used as a non-invasive way to sample for viruses in wild populations.

Materials and methods

Samples

From February 2008 until August 2024, Dunnocks were ringed, in a rural garden, near Minehead, in Somerset, as part of the British Trust for Ornithology (BTO) Retrapping Adults for Survival Scheme (https://www.bto.org/our-science/publications/birdtrends/2020/methods/retrapping-adults-survival-scheme, last accessed 9 September 2024). At each capture, in addition to the usual data collected during bird ringing, records were made of signs of disease or the presence of ectoparasites. Louse flies that left Dunnocks during routine ringing activities were collected, identified according to a key (Hutson, Reference Hutson1984), and preserved in 70% ethanol (with distilled water and no other excipients).

During 2023, both at the main APV study site near Minehead in Somerset, and at a second site on the Wirral Peninsula near Liverpool where lesions consistent with APV had been observed, flies were preserved in RNAlater for DNA and RNA analyses.

Additional flies were collected from all bird species from 2020 to 2023, as part of the ‘Mapping the UK’s Flat Flies Project’ (Wawman, Reference Wawman2025) and stored in 70% ethanol for later analyses.

Next generation sequencing (NGS)

One fly, taken from a Dunnock with APV at the second site, and the only one from an infected Dunnock that was preserved in RNAlater, was chosen for DNA and RNA extraction, using shotgun Next Generation Illumina Sequencing (NGS). The fly was prepared by washing in phosphate buffered saline (PBS) to remove the RNAlater, then in 5% sodium hypochlorite solution to remove contaminants, and finally twice more in PBS to remove the sodium hypochlorite.

DNA and RNA were isolated separately from the fly using the QIAgen AllPrep DNA/RNA MiniKit (Qiagen, Manchester, UK). Briefly, the fly was homogenized in 300µl RLT buffer using a single 5 mm steel bead in a TissueLyserII (Qiagen) for 5 min at 30 Hz. After this, manufacturer’s instructions were followed and DNA was eluted into 60 µl buffer EB and RNA was eluted into 50 µl RNase-free water. Sequencing libraries were prepared using Nexetra XT kits (Illumina, Cambridge, UK) and sequencing using a Nextseq sequencer (Illumina, Cambridge, UK). Illumina) to generate 2× 150 base paired-end reads.

The raw data were filtered to remove adaptors and low quality reads using the programs fastp version 0.23.4 (Chen et al., Reference Chen2018) and multiqc v 1.19 (Ewels et al., Reference Ewels, Magnusson and Lundin2016). The sequences were aligned and the Dipteran host genomes removed in the program Bowtie2 (Langmead and Salzberg, Reference Langmead and Salzberg2012). Sequences were assembled using MEGAHIT (D. Li et al., Reference Li, Liu and Luo2015). Taxonomic classification was carried out using the program Kracken2 (Wood et al., Reference Wood, Lu and Langmead2019), with the program Bracken (Lu et al., Reference Lu, Breitwieser and Thielen2017) to estimate species abundance and facilitate removal of poor quality and low abundance sequences. Viral sequence detection was performed using ViralVerify (https://github.com/ablab/viralVerify/tags, last accessed 16 September 2024) and ViralComplete (https://github.com/ablab/viralComplete last accessed 16 September 2024) with sequences obtained from the NCBI viral database (https://www.ncbi.nlm.nih.gov/labs/virus/vssi/ last accessed 16 September 2024). APV Virus sequences identified using these methods were isolated and the identity was confirmed using BLAST+ (Camacho et al., Reference Camacho2009).

PCR screening of samples

Twenty-four of the flies previously preserved in 70% ethanol were selected from a range of sites across England, across an area where APV is likely to occur in Dunnocks, from sites where APV had not been observed on any bird species by bird ringers, as well as sites from which it had been reported from Dunnocks or other species. Twenty-three flies were from Dunnocks and one from a Great Spotted Woodpecker Dendrocopos major.

These flies were not washed, to avoid removing evidence that they might be mechanical vectors. Flies were homogenized in liquid nitrogen prior to DNA extraction, using the DNeasy Blood and Tissue kit (QIAGEN) according to the manufacturer’s instructions. Screening for APV was carried out through amplification of a 578-bp PCR product of the APV 4b core protein gene (fpv167) as previously described, using primer sequences 5′-CAGCAGGTGCTAAACAACAA-3′ and 5′-CGGTAGCTTAACGCCGAATA-3′ (Lawson et al., Reference Lawson, Lachish and Colvile2012). Amplification was achieved using the high-fidelity Q5 polymerase (NEB) under the following cycling conditions: 98°C (5 min); 40 × [98°C (1 min); 64°C (20 s); 72°C (20 s)]; 72°C (7 min). Following confirmation of a product of the correct size on an agarose gel against a positive control of a DNA sequence from a Dunnock pox lesion at the main site (GenBank Accession number PP756527), APV was confirmed through bidirectional Sanger sequencing (Source BioScience) using the same primers as for amplification.

Computational analysis

Other analyses were performed and the phenology plotted in R version 4.2.1 (R Development Core Team, 2022) using packages dplyr (Wickham et al., Reference Wickham2023) and lubridate (Grolemund and Wickham, Reference Grolemund and Wickham2011) to process the data. The map was plotted using the packages maps (Becker et al., Reference Becker2022), mapdata (Brownrigg, Reference Brownrigg2022) and scales (Wickham and Seidel, Reference Wickham and Seidel2022).

Results

In order to investigate the association between APV infection, small Passerine bird species and louse flies, Dunnocks were sampled from sites in England. Two species of louse flies were identified from Dunnocks, O. avicularia and O. fringillina.

Figure 1 shows the relationship between Dunnocks with evidence of APV infection and presence of flat flies (both species) and Dunnocks based on cumulative data over the study period. APV infections were reported during the first 16 weeks of the year and then a later surge in infections during weeks 30–36, reaching a peak of 15 cases during week 34, then declining for the remaining weeks of the year. Flat flies were only detected on Dunnocks from week 24 and peaked on week 29 with another peak on week 31. This preceded the peak of APV cases by 2–3 weeks as shown when the louse fly frequency plot is moved to three weeks later (Figure 2).

Figure 1. Weekly cases of avian pox in Dunnocks (green bars) and numbers of louse flies (O. avicularia and O. fringillina combined) found on Dunnocks (black stars and solid lines) for all years combined, from a 16·5 year study in Somerset, UK.

Figure 2. Weekly detection of avian pox in Dunnocks (green dots) and presence of louse flies on Dunnocks (black stars), with the louse flies plotted 3 weeks later than their actual dates, to show the similarity in peaks, otherwise separated by the approximate incubation period of avian pox in Dunnocks.

NGS sequencing and classification with Kracken2 identified five non-overlapping sequences of DNA as APV covering a total of 598 base pairs (Table 1) from an O. avicularia taken from a Dunnock with APV at the second site (Table 2). However, the length of sequence detected (<600 base pairs) represents less than 0.2% of the APV genome (comparison with Magpiepox virus 2 complete genome of 298,392 bp, GenBank Acc. No. MW485973). It is not clear if this represents residual presence of virus on the external surface of the louse fly (e.g. contamination of mouthparts following feeding on the Dunnock), despite surface disinfection, or presence within the fly (gut, oral cavity, salivary glands or other internal organs) but at very low levels. No APV RNA was detected.

Table 1. Avian pox contig BLAST results from NGS sequencing. This table shows the results for the top blast hit of each of the contigs identified as being avian pox, from the Ornithomya avicularia taken from a Dunnock at the second site on the Wirral Peninsula near Liverpool, England

Table 2. Louse flies Ornithomya spp. Tested for APV. Results of sequencing with details of bird host and site and GenBank accession numbers, for the Avipoxvirus 4b core protein gene sequences

To more comprehensively test for the presence of APV 24 further samples of louse flies were subjected to PCR-based analysis for APV DNA. Eleven of 23 flies tested from Dunnocks and the one from the Great Spotted Woodpecker (Table 2), were PCR positive for APV. These included one Ornithomya fringillina from a Dunnock with APV at the site on Wirral Peninsula near Liverpool. All PCR-derived sequences were identical across the 512 bp where they aligned, and a 100% match to in this high-quality central region of the sequence obtained from an APV lesion on a Dunnock at the main site. These positive flies were from the main study site (Somerset: n = 4), two sites (Corby and Stanford Reservoir in Northamptonshire) where APV was occasionally observed in Great Tits Parus major, but not in Dunnocks, either during the study or in the previous year (n = 3), and three sites (Rutland Water in Rutland, near Sandy in Bedfordshire, and West Down in Devon) where APV had not been observed in any bird species (n = 4). The locations of these sites, and those at which no flies tested positive (n = 4), are shown in the map (Figure 3).

Figure 3. Map of the sites from which flies were tested: black squares – no avian pox detected, in either tested louse flies or observed in birds; red squares – avian pox detected but no birds observed with avian pox; red stars – birds observed with avian pox and flies tested positive.

In total, 13 out of 25 louse flies tested positive for APV, 6/9 O. fringillina and 7/16 O. avicularia. Six of the flies were recorded as being female, four male and in three the sex was not recorded (Table 2).

None of the Dunnocks without active disease at the time of capture, from which the flies were taken, were later seen to develop APV, although most (7/10) were not recaptured. However, most (7/10) were juveniles at the time of capture and would have been expected to leave their natal areas (the ringing sites) during their postnatal dispersal.

Discussion

APV DNA was detected in 13 of 25 louse flies, of two species, O. avicularia and O. fringillina, that were obtained from sites across England. All the 512 base pair sequences obtained from the louse flies by PCR were identical to that obtained from an APV lesion on a Dunnock at the main site, and matched reference sequences from NCBI GenBank. The APV positive flies included one O. avicularia and one O. fringillina that had been taken from Dunnocks with APV lesions, the rest having been taken from Dunnocks with no signs of disease, and a single fly from an apparently healthy Great Spotted Woodpecker. Field studies showed that peaks in the presence of louse flies on Dunnocks were followed three weeks later by peaks in the prevalence of APV.

The three week interval falls within the estimate of the incubation period of APV in Dunnocks of 13–48 days (Wawman et al., unpublished data). However, phenological comparisons may not be a reliable means of identifying a vector because other vectors’ emergence may be triggered by the same climatic conditions as that of the louse flies. Arthropod vectors are known to down-regulate their hosts’ immune systems which may promote transmission of APV (Wikel, Reference Wikel1999). Moreover, reproduction-associated stress or hormonal induced immunosuppression may also make Dunnocks more susceptible to APV at particular times of the year.

Although conclusive evidence that APV is vectored by Hippoboscidae may be challenging to obtain, the detection of APV DNA associated with louse flies is strong evidence of the potential for a role in transmission. If, as expected from knowledge of its mode of transmission by other vectors, APV is mechanically vectored, evidence of viral replication in the vector, such as Bollinger Bodies (Bollinger, Reference Bollinger1873) or the presence of viral mRNA, would not be expected, and indeed RNA was not detected in this study, although only a single specimen taken from a Dunnock with APV was tested, and further testing is needed to confirm this result. Using sequences to compare viral DNA in avian hosts and parasites might confirm that the same strains are circulating in both (Yeo et al., Reference Yeo, Wang and Chong2019), but would not prove beyond doubt that Hippoboscids are responsible for transmission. In this study, all of the 512 base pair sequences obtained by PCR were identical, and matched that taken from an APV lesion on a Dunnock at the main site, but longer sequences may be necessary to fully establish that they are the same strain of the virus.

Isolating APV DNA from a Hippoboscid taken from a Dunnock that later developed APV, might more strongly implicate Hippoboscids as vectors. However, finding APV DNA in 52% of the louse flies tested, including flies from sites where no APV had been observed in any species of bird, indicates that APV may be circulating in the wild bird population at a far higher rate than expected purely from the observed presence of clinical signs. Lesions were only observed in 8·3% of Dunnocks (Wawman et al., unpublished results) and 7·2% of House Finches Haemorhous mexicanus (McGraw et al., Reference McGraw, Aguiar de Souza Penha and Drake2022), but PCR detected APV in the spleens of 43% of wild birds in Italy (Bertelloni et al., Reference Bertelloni2022), and 69·2% of a sample of avian species introduced into New Zealand were seropositive (Ha et al., Reference Ha, Banda and Alley2013). It would be necessary to use other methods such as invasive sampling techniques to detect the timing of seroconversion in birds in relation to the presence of flies carrying APV, which would be difficult in a wild host population.

Detecting APV in louse flies at sites where no APV has been observed, and at sites where APV has only been observed in species other than Dunnocks, such as at Stanford Reservoir and Corby, where it was only seen occasionally in Great Tits, might suggest that APV is of low virulence in Dunnocks. It is also likely that it exists in an enzootic cycle between different wild bird species and louse flies and other arthropod vectors. The two species of louse flies found to be positive for APV in this study, O. avicularia and O. fringillina are found on a wide range of bird species (Wawman, Smith and Sheldon, unpublished results) and could be vectoring APV between Dunnocks, Great Tits and other affected species. This hypothesis is supported by the presence of an APV-positive louse fly on a Great Spotted Woodpecker.

Louse flies may have potential as a means of monitoring the potential for vector-transferred disease in wild bird populations. NGS sequencing could be used to determine which pathogens of potential interest are present in louse flies, potentially by pooling specimens to minimise the cost. Pathogen targeted PCR could be used in cases where focal pathogens have already been identified as a potential cause for concern and sequences compared to track different strains of concern. Individual based analyses can be used to quantify the numbers of infected individuals, including those in the prodromal phase of disease and those in which infections remain subclinical, and to determine the geographical areas in which diseases are present. Expanding this approach to keds, could also allow diseases to be tracked in the wild deer population, and in livestock such as horses, sheep and goats in regions where they are frequently infected.

Other parasites have been used to take samples from wild birds, for example, blood sucking bugs, Dipetalogaster maximus, contained within dummy eggs have been used avoid stress when taking blood samples from adult nesting birds including Common Terns Sterna hirundo for cortisol assays (Arnold et al., Reference Arnold, Oswald and Voigt2008), and Eurasian Kestrel Falco tinnunculus for counting blood parasites, leucocyte profiles and microsatellite analysis for paternity tests and genetic sexing (Sumasgutnet et al., Reference Sumasgutnet, Rubin and Gamauf2014), and have been shown to be a reliable method in Common Swift Apus apus (Bauch et al., Reference Bauch2013). Bat flies (Diptera: Nycteribiidae) which are closely related to the louse flies, and sometimes included as part of the Hippoboscidae, have been used to investigate the presence of Bartonella spp. Polychromophilus spp. and Trypanosoma spp. in bats (Szentiványi et al., Reference Szentiványi, Markotter and Dietrich2020).

Using louse flies to screen for the presence of disease in a population would have several advantages compared to using serology or other samples from birds. Firstly, serology and other blood tests require invasive sampling techniques, performed by veterinary surgeons or individuals who have undergone additional training and licensing, which limits the sample size and geographical area over which a study can take place, and adds costs to any project: louse flies can be collected by any bird ringer, or wildlife rehabilitator or member of the public who comes across a sick, injured or dead bird hosting louse flies. Citizen science projects, such as the Mapping the UK’s Flat Flies Project (Wawman, Reference Wawman2025) could allow widespread coverage across a region. Additionally, serology only indicates that a bird has produced an immune response at some point during its life, with no way of determining the timing of the infection, whereas, because of the short life span of Hippoboscids, assuming that transovarial and transstadial transmission can be ruled out, any infection within them is likely to have been acquired in the same season. Adult louse flies have a life span of around three to six months (Hutson, Reference Hutson1984), so APV virions would have to be acquired in the same year. Using PCR-sequencing approaches to detect viral DNA is specific for the disease under investigation, whereas relying on observations of sick birds in the field, or even in the hand by trained bird ringers, risks both mis-diagnoses and a significant underestimate of prevalence of infection.

A major disadvantage of using wild louse flies is that the sampling is likely to be somewhat random in nature, as only birds with ectoparasites that can be caught can be sampled, and there may be differences in the health of birds with and without parasites, especially if co-infections are present. Quantitative results, such as an estimate of disease prevalence will be difficult to obtain. Sick birds may be easier to catch if flying weakly, or be so sick that they remain hidden and are not caught. Ectoparasites may be affected by the presence of avian endoparasites: the louse fly Olfersia spinifera, was found to be less likely to switch hosts when infected with Haemoproteus iwa (Levin and Parker, Reference Levin and Parker2014) and ectoparasites may aggregate on certain hosts with co-infection. The prevalence of micro-organisms may not be consistent between vectors and their hosts – a study of bats and bat flies showed twice the prevalence of Trypanosoma spp. and Polychromophilus spp. in hosts compared to their ectoparasites, but a similar prevalence of Bartonella spp. in both groups (Szentiványi et al., Reference Szentiványi, Markotter and Dietrich2020).

Vertical transmission leading to infection of louse flies might also be a potential issue for some diseases in which it occurs and might explain the higher rate of detection of APV in the louse flies compared to their hosts. Bartonella schoenbuchensis is vertically transmitted in the Deer Ked Lipoptena cervi (de Bruin et al., Reference de Bruin2015), and Anaplasma ovis in the Sheep Ked Melophagus ovinus (Zhao et al., Reference Zhao, He and Li2018), but vertical transmission of viral pathogens has not been reported in louse flies. However, vertical transmission of endosymbionts occurs (Duron et al., Reference Duron2014) and some arthropod viruses are vertically transmitted via both ova and spermatozoa (Longdon and Jiggins, Reference Longdon and Jiggins2012). Some sigmaviruses, a group of RNA viruses found naturally in Diptera, are known from Hippoboscids, such as the Wuhan Louse Fly sigmaviruses (C.-X. Li et al., Reference Li, Shi and Tian2015) and Aksy-Durag Melophagus sigmavirus (Litov et al., Reference Litov, Belova and Kholodilov2021). It is possible that compared to the transovarial route, reproduction by adenotrophic viviparity in the Hippoboscidae, could favour vertical transmission, as there is prolonged maternal contact between the female and her offspring, during which time it is fed from a specialised milk gland.

Despite these issues, useful results might be obtained similar to those used in the surveillance used in monitoring other vector borne diseases such as the European network for medical and veterinary entomology (VectorNet) (https://www.ecdc.europa.eu/en/about-us/partnerships-and-networks/disease-and-laboratory-networks/vector-net, last accessed 22 November 2024), which monitors the ranges of mosquitos, ticks, biting sandflies, and midges across Europe, or other studies such as VB-RADAR in the UK, which monitors the flaviviruses, WNV and Usutu Virus in mosquitoes (https://www.vb-radar.com, last accessed 22 November 2024). Using louse flies may have advantages over using other arthropod vectors to monitor disease, because, although louse flies switch hosts (Corbet, Reference Corbet1956), those collected by ringers are taken from a host with a ring bearing a unique identifying code, which allows the bird to be followed throughout its life, potentially giving additional information about the progress of diseases that would not be obtained otherwise.

From the phenological and molecular evidence presented in this paper, it is likely that the Ornithomya spp. present in the UK, especially O. avicularia and O. fringillina, are vectors of APV in Dunnocks. Further research will be required to determine the exact role of louse flies in vectoring APV in Dunnocks, and in other avian species, and how this occurs. Although mechanical transmission would be the expected route, the possibility of vertical transmission facilitating autochthonous disease transmission should be considered.

Louse flies may provide a relatively cheap and non-invasive method of monitoring disease outbreaks (or assessing potential at risk populations) in wild birds, when combined with targeted DNA sequencing for specific pathogens.

Data availability statement

Details of the flies sequenced can be found in Table 1 together with the accession numbers for the APV sequences.

Acknowledgements

The authors wish to thank Ben Sheldon for his advice, and all of the bird ringers and entomologists who contributed to the ‘Mapping the UK’s Flat Flies Project,’ especially those who collected the flies used in this study: Chris W. Dee, Dr. Greg Conway, Samuel Gray, Adam Homer, Denise Lamsdell, Bob Medland, Sara Miller, Luke Nelson, and members of Stanford Ringing Group.

Author contributions

DCW: conceptualization, project management, data collection, specimen collection, specimen identification, analysis (phenology), data visualization; writing: first draft, writing: review and editing; BPJ: lab work (NGS sequencing), analysis (NGS genomics), writing: review and editing; SRF: lab work (PCR sequencing), writing: review and editing; JET: specimen collection, writing: review and editing; NJ: resources (NGS sequencing), writing: review and editing; ALS: supervision, writing: review and editing.

Financial support

This research received no specific grant from any funding agency, commercial or not-for-profit sectors.

Competing interests

The authors declare that there are no conflicts of interest.

Ethical standards

All birds handled in this study were ringed under licence: BTO ringing permits S5420 issued to DCW, and S3144 issued to JET for the two main sites, and the permits of other trained ringers talking part in the Mapping the UK’s Flat Flies Project elsewhere. All those mentioned in the acknowledgements have given informed written consent for their names to be published.

References

Alehegn, E, Chanie, M and Mengesha, D (2014) A systematic review of serological and clinicopathological features and associated risk factors of avian pox. British Journal of Poultry Sciences 3(3), 7887. doi:10.5829/idosi.bjps.2014.3.3.8553Google Scholar
Arnold, JM, Oswald, SA, Voigt, CC, et al. (2008) Taking the stress out of blood collection: Comparison of field blood‐sampling techniques for analysis of baseline corticosterone. Journal of Avian Biology 39(5), 588592. doi:10.1111/j.0908-8857.2008.04265.xCrossRefGoogle Scholar
Baker, JR (1963) Transmission of haemoproteus sp. of English wood-pigeons by ornithomyia avicularia. the Journal of Protozoology 10(4), 461465.10.1111/j.1550-7408.1963.tb01705.xCrossRefGoogle Scholar
Baker, JR (1967) A Review of the role played by the Hippoboscidae (Diptera) as vectors of endoparasites. Journal of Parasitology 53(2), 412418. doi:10.2307/3276603CrossRefGoogle ScholarPubMed
Bauch, C, et al. (2013) “Bug-eggs” for common swifts and other small birds: Minimally-invasive and stress-free blood sampling during incubation. Journal of Ornithology 154(2), 581585. doi:10.1007/s10336-013-0931-xCrossRefGoogle Scholar
Becker, RA, et al. (2022) ‘maps: Draw Geographical Maps. R package version 3.4.1’. Available at: https://cran.r-project.org/package=maps (accessed 30 December 2022).Google Scholar
Bertelloni, F, et al. (2022) Molecular detection of Avipoxvirus in wild birds in central Italy. Animals 12(3), 17. doi:10.3390/ani12030338CrossRefGoogle ScholarPubMed
Bezerra-Santos, MA and Otranto, D (2020) Keds, the enigmatic flies and their role as vectors of pathogens. Acta Tropica 209, . doi:10.1016/j.actatropica.2020.105521CrossRefGoogle ScholarPubMed
Bollinger, O (1873) Ueber epithelioma contagiosum beim haushuhn und die sogenannten pocken des geflügels. Archives of Pathological Anatomy and Physiology and of Clinical Medicine 58(3–4), 349361. doi:10.1007/BF02105254Google Scholar
Brownrigg, R (2022) mapdata: Extra Map Databases. R package version 2.3.1. 17. Available at: https://cran.r-project.org/web/packages/mapdata/mapdata.pdf (accessed 30 December 2022).Google Scholar
Camacho, C, et al. (2009) BLAST+: Architecture and applications. BMC Bioinformatics 10(1), . doi:10.1186/1471-2105-10-421CrossRefGoogle ScholarPubMed
Cepeda, AS, et al. (2019) Experimental characterization of the complete life cycle of Haemoproteus columbae, with a description of a natural host-parasite system used to study this infection. International Journal for Parasitology 49(12), 975984. doi:10.1016/j.ijpara.2019.07.003CrossRefGoogle ScholarPubMed
Cerutti, F, et al. (2018) The microbiota of hematophagous ectoparasites collected from migratory birds. PLOS ONE 13(8), . doi:10.1371/journal.pone.0202270CrossRefGoogle ScholarPubMed
Chen, S, et al. (2018) Fastp: An ultra-fast all-in-one FASTQ preprocessor. Bioinformatics 34(17), i884i890. doi:10.1093/bioinformatics/bty560CrossRefGoogle ScholarPubMed
Cigler, P, et al. (2024) Trypanosomiasis: An emerging disease in Alpine swift (Tachymarptis melba) nestlings in Switzerland? International Journal for Parasitology: Parasites and Wildlife 23, . doi:10.1016/j.ijppaw.2023.100895Google ScholarPubMed
Čisovská Bazsalovicsová, E, et al. (2023) Bird Louse Flies Ornithomya spp. (Diptera: Hippoboscidae) as Potential Vectors of Mammalian Babesia and Other Pathogens. Vector-Borne and Zoonotic Diseases, 19. doi:10.1089/vbz.2022.0088Google ScholarPubMed
Corbet, GB (1956) the life-history and host-relations of a Hippoboscid fly Ornithomyia fringillina Curtis. The Journal of Animal Ecology 25(2), . doi:10.2307/1934CrossRefGoogle Scholar
Cull, B, et al. (2024) iNaturalist community observations provide valuable data on human-mosquito encounters. Journal of Vector Ecology 49(2). doi:10.52707/1081-1710-49.2.r12CrossRefGoogle ScholarPubMed
DaMassa, AJ (1966) The role of Culex tarsalis in the transmission of fowl pox virus. Avian Diseases 10(1), . doi:10.2307/1588207CrossRefGoogle Scholar
de Bruin, A, et al. (2015) Vertical transmission of Bartonella schoenbuchensis in Lipoptena cervi. Parasites and Vectors 8(1), . doi:10.1186/s13071-015-0764-yCrossRefGoogle ScholarPubMed
Dick, CW (2018) Checklist of the world Hippoboscidae (Diptera: Hippoboscoidea). (January). Available at: https://www.researchgate.net/publication/322579074_CHECKLIST_OF_WORLD_NYCTERIBIIDAE_DIPTERA_HIPPOBOSCOIDEA (accessed 13 April 2025).Google Scholar
Duron, O, et al. (2014) Origin, acquisition and diversification of heritable bacterial endosymbionts in louse flies and bat flies. Molecular Ecology 23(8), 21052117. doi:10.1111/mec.12704CrossRefGoogle ScholarPubMed
Edwards, GR (1955) Excrescenses about the eyes and on the legs and feet of dunnocks. British Birds 48(4), 186187.https://britishbirds.co.uk/content/notes-200Google Scholar
Ewels, P, Magnusson, M, Lundin, S et al. (2016) MultiQC: Summarize analysis results for multiple tools and samples in a single report. Bioinformatics 32(19), 30473048. doi:10.1093/bioinformatics/btw354CrossRefGoogle Scholar
Farajollahi, A, Crans, WJ, Nickerson, D et al. (2005) Detection of West Nile virus RNA from the louse fly Icosta americana (Diptera: Hippoboscidae). Journal of the American Mosquito Control Association 21(4), 474476. doi:10.2987/8756-971X(2006)21[474:DOWNVR]2.0.CO;2CrossRefGoogle ScholarPubMed
Grolemund, G and Wickham, H (2011) Dates and times made easy with lubridate. Journal of Statistical Software 40(3), 125. doi:10.18637/jss.v040.i03CrossRefGoogle Scholar
Ha, HJ, Banda, M, Alley, MR et al. (2013) The seroprevalence of Avipoxvirus and its association with avian malaria (Plasmodium spp.) infection in introduced passerine birds in the southern regions of the North Island of New Zealand. Avian Diseases 57(1), 109115. doi:10.1637/10285-061912-ResNote.1CrossRefGoogle ScholarPubMed
Hill, DS (1962) A study of the distribution and host preferences of three species of Ornithomyia (Diptera: Hippoboscidae) In the British Isles. Proceedings of the Royal Entomological Society of London. Series A, General Entomology 37(4–6), 3748. doi:10.1111/j.1365-3032.1962.tb00286.xCrossRefGoogle Scholar
Huong, CTT, Murano, T, UNO, Y, et al. (2014) Molecular detection of avian pathogens in poultry red mite (Dermanyssus gallinae) collected in chicken farms. Journal of Veterinary Medical Science 76(12), 15831587. doi:10.1292/jvms.14-0253CrossRefGoogle ScholarPubMed
Hutson, AM (1984) Keds, flat-flies and bat-flies: Diptera, Hippoboscidae and Nycteribiidae. Handbooks for the Identification of British Insects 10(7), . https://www.royensoc.co.uk/sites/default/files/Vol10_Part07_Hutson.pdfGoogle Scholar
ICTV (2024) ‘ICTV Master Species List 2023MSL39.v3’. International Committee on Taxonomy of Viruses. Available at: https://ictv.global/msl (accessed 13 April 2025).Google Scholar
Kligler, IJ, Muckenfuss, RS and Rivers, TM (1929) Transmission of fowl-pox by mosquitoes. The Journal of Experimental Medicine 49(4), 649660. doi:10.1084/jem.49.4.649CrossRefGoogle ScholarPubMed
Lachish, S, Lawson, B, Cunningham, AA, et al. (2012) Epidemiology of the emergent disease Paridae pox in an intensively studied wild bird population. PLoS One 7(11), . doi:10.1371/journal.pone.0038316CrossRefGoogle Scholar
Langmead, B and Salzberg, SL (2012) ‘Fast gapped-read alignment with Bowtie 2’. Nature Methods 9(4), 357359. doi:10.1038/nmeth.1923CrossRefGoogle ScholarPubMed
Lawson, B, Lachish, S, Colvile, KM, et al. (2012) Emergence of a novel avian pox disease in British tit species. PLoS One 7(11), . doi:10.1371/journal.pone.0040176CrossRefGoogle ScholarPubMed
Lee, HR, Koo, B-S, Kim, J-T, et al. (2017) Molecular epidemiology of avian poxvirus in the oriental turtle dove (Streptopelia Orientalis) and the biting midge (Culicoides Arakawae) In The Republic of Korea. Journal of Wildlife Diseases 53(4), . doi:10.7589/2016-10-230CrossRefGoogle Scholar
Levin, II and Parker, PG (2014) Infection with Haemoproteus iwa affects vector movement in a hippoboscid fly-frigatebird system. Molecular Ecology 23(4), 947953. doi:10.1111/mec.12587CrossRefGoogle Scholar
Li, C-X, Shi, M and Tian, J-H ( 2015) Unprecedented genomic diversity of RNA viruses in arthropods reveals ancestry of negative sense RNA. eLife 4(4), 126. doi:10.7554/eLife.05378CrossRefGoogle ScholarPubMed
Li, D, Liu, C-M, Luo, R, et al. (2015) MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. Bioinformatics 31(10), 16741676. doi:10.1093/bioinformatics/btv033CrossRefGoogle ScholarPubMed
Litov, AG, Belova, OA, Kholodilov, IS, et al. (2021) Possible arbovirus found in virome of Melophagus ovinus. Viruses 13(12), . doi:10.3390/v13122375CrossRefGoogle ScholarPubMed
Longdon, B and Jiggins, FM (2012) Vertically transmitted viral endosymbionts of insects: Do sigma viruses walk alone? Proceedings of the Royal Society B: Biological Sciences 279(1744), 38893898. doi:10.1098/rspb.2012.1208CrossRefGoogle ScholarPubMed
Lu, J, Breitwieser, FP, Thielen, P, et al. (2017) Bracken: Estimating species abundance in metagenomics data. PeerJ Computer Science 3(1), . doi:10.7717/peerj-cs.104CrossRefGoogle ScholarPubMed
McGraw, KJ, Aguiar de Souza Penha, V, Drake, DJ, et al. (2022) Poxvirus infection in house finches (Haemorhous mexicanus): Genome sequence analysis and patterns of infection in wild birds. Transboundary and Emerging Diseases 69(5), e2318e2328. doi:10.1111/tbed.14575CrossRefGoogle ScholarPubMed
Obanda, V, Michuki, G, Jowers, MJ, et al. (2016) Complete genomic sequence of virulent pigeon paramyxovirus in laughing doves (Streptopelia senegalensis) in Kenya. Journal of Wildlife Diseases 52(3), 599608. doi:10.7589/2015-07-199CrossRefGoogle ScholarPubMed
R Development Core Team (2022) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. Available at: https://www.r-project.org/ (accessed 30 December 2022).Google Scholar
Santolíková, A, Brzoňová, J, Čepička, I, et al. (2022) Avian louse flies and their trypanosomes: New vectors, new lineages and host–parasite associations. Microorganisms 10(3), . doi:10.3390/microorganisms10030584CrossRefGoogle ScholarPubMed
Shirinov, FB, Ibragimova, AI and Misirov, ZG (1972) Spread of fowl pox virus by the mite Dermanyssus gallinae.. Veterinarnyi Institut, USSR 4, 4849. https://www.cabdirect.org/cabdirect/abstract/19722200639Google Scholar
Smits, JE, Tella, JL, Carrete, M, et al. (2005) An epizootic of avian pox in endemic short-toed larks (Calandrella rufescens) and berthelots pipits (Anthus berthelotti) in the Canary Islands, Spain. Veterinary Pathology 42(1), 5965. doi:10.1354/vp.42-1-59CrossRefGoogle ScholarPubMed
Sumasgutnet, P, Rubin, I and Gamauf, A (2014) Collecting blood samples in Eurasian Kestrels (Falco tinnunculus) (Aves: Falconidae) via blood-sucking bugs (Insecta: Hemiptera: Reduviidae) and their use in genetics and leucocyte profiles Author (s): P. Sumasgutner, I. Rubin and A. Gamauf. Annalen Des Naturhistorischen Museums in Wien. Serie B Für Botanik Und Zoologie 116, 247257.Google Scholar
Szentiványi, T, Markotter, W, Dietrich, M, et al. (2020) Host conservation through their parasites: Molecular surveillance of vector-borne microorganisms in bats using ectoparasitic bat flies. Parasite 27(72), 110. doi:10.1051/parasite/2020069CrossRefGoogle ScholarPubMed
Van Riper, C and Forrester, DJ (2007) Avian Pox. In Thomas, NJ, Hunter, DB and Atkinson, CT (eds), Infectious Diseases of Wild Birds Ames, Iowa, USA: Blackwell Publishing Professional, 131176. doi:10.1002/9780470344668.ch6CrossRefGoogle Scholar
Wawman, DC (2024) Ornithomya biloba, Pseudolynchia garzettae and Pseudolynchia canariensis (Diptera: Hippoboscidae): Three new United Kingdom colonists and potential disease vectors. Medical and Veterinary Entomology 38(2), 160171. doi:10.1111/mve.12703CrossRefGoogle ScholarPubMed
Wawman, DC (2025) Citizen scientists mapping the United Kingdoms and Republic of Irelands flat flies (louse flies) (Diptera: Hippoboscidae) reveal a vectors range shift. Medical and Veterinary Entomology, 117. doi:10.1111/mve.12795Google Scholar
Wickham, H, et al. (2023) Package dplyr: a grammar of data manipulation. Available at: https://cran.r-project.org/package=dplyr (accessed 30 December 2022).Google Scholar
Wickham, H and Seidel, D (2022) Scales: Scale Functions for Visualization. Available at: https://cran.r-project.org/package=scales (accessed 30 December 2022).Google Scholar
Wikel, SK (1999) Modulation of the host immune system by ectoparasitic arthropods. BioScience 49(4), 311320. doi:10.2307/1313614CrossRefGoogle Scholar
Wood, DE, Lu, J and Langmead, B (2019) Improved metagenomic analysis with Kraken 2. Genome Biology 20(1), . doi:10.1186/s13059-019-1891-0CrossRefGoogle ScholarPubMed
Yeo, G, Wang, Y, Chong, SM, et al. (2019) Characterization of fowlpox virus in chickens and bird-biting mosquitoes: A molecular approach to investigating Avipoxvirus transmission. Journal of General Virology 100(5), 838850. doi:10.1099/jgv.0.001209CrossRefGoogle ScholarPubMed
Zhao, L, He, B, Li, K-R, et al. (2018) First report of Anaplasma ovis in pupal and adult Melophagus ovinus (sheep ked) collected in South Xinjiang, China. Parasites and Vectors 11(1), . doi:10.1186/s13071-018-2788-6CrossRefGoogle ScholarPubMed
Figure 0

Figure 1. Weekly cases of avian pox in Dunnocks (green bars) and numbers of louse flies (O. avicularia and O. fringillina combined) found on Dunnocks (black stars and solid lines) for all years combined, from a 16·5 year study in Somerset, UK.

Figure 1

Figure 2. Weekly detection of avian pox in Dunnocks (green dots) and presence of louse flies on Dunnocks (black stars), with the louse flies plotted 3 weeks later than their actual dates, to show the similarity in peaks, otherwise separated by the approximate incubation period of avian pox in Dunnocks.

Figure 2

Table 1. Avian pox contig BLAST results from NGS sequencing. This table shows the results for the top blast hit of each of the contigs identified as being avian pox, from the Ornithomya avicularia taken from a Dunnock at the second site on the Wirral Peninsula near Liverpool, England

Figure 3

Table 2. Louse flies Ornithomya spp. Tested for APV. Results of sequencing with details of bird host and site and GenBank accession numbers, for the Avipoxvirus 4b core protein gene sequences

Figure 4

Figure 3. Map of the sites from which flies were tested: black squares – no avian pox detected, in either tested louse flies or observed in birds; red squares – avian pox detected but no birds observed with avian pox; red stars – birds observed with avian pox and flies tested positive.