Hostname: page-component-5b777bbd6c-rbv74 Total loading time: 0 Render date: 2025-06-19T10:46:33.113Z Has data issue: false hasContentIssue false

Association of the CACNA2D1 gene with milk yield and milk quality traits in Holstein cattle

Published online by Cambridge University Press:  19 May 2025

Fadime Daldaban*
Affiliation:
Department of Genetics, Faculty of Veterinary Medicine, Erciyes University, 38280, Kayseri, Türkiye
Jale Metin Kıyıcı
Affiliation:
Department of Animal Science, Faculty of Agriculture, Erciyes University, 38280, Kayseri, Türkiye
Bilal Akyüz
Affiliation:
Department of Genetics, Faculty of Veterinary Medicine, Erciyes University, 38280, Kayseri, Türkiye
Esma Gamze Aksel
Affiliation:
Department of Genetics, Faculty of Veterinary Medicine, Erciyes University, 38280, Kayseri, Türkiye
Mahmut Kaliber
Affiliation:
Department of Animal Science, Faculty of Agriculture, Erciyes University, 38280, Kayseri, Türkiye
Mehmet Ulaş Çınar
Affiliation:
Department of Animal Science, Faculty of Agriculture, Erciyes University, 38280, Kayseri, Türkiye Department of Veterinary Microbiology & Pathology, Washington State University, Pullman, WA, 99164, USA
Korhan Arslan
Affiliation:
Department of Genetics, Faculty of Veterinary Medicine, Erciyes University, 38280, Kayseri, Türkiye
*
Corresponding author: Fadime Daldaban; Email: fadimeozdemir@erciyes.edu.tr

Abstract

The aim of this study was to investigate the association of the rs43389227, rs43390124 and rs482883241 single-nucleotide polymorphisms (SNPs) of the bovine calcium channel, voltage-dependent, alpha-2/delta subunit 1 (CACNA2D1) gene with milk yield and quality traits in Holstein cattle. For this purpose, 166 Holstein dairy cows were genotyped for these three SNPs. Correlation analyses showed that the rs43389227 SNP was associated with 305-day milk yield (P < 0.05). Besides, rs43390124 SNP was found to be associated not only with 305-day milk yield but also with milk fat, milk quality traits, somatic cell score, electrical conductivity and pH (P < 0.05). The results of this study suggest that the rs43389227 and rs43390124 SNPs could be used in breeding for the improvement of milk yield and milk quality in cattle. Furthermore, based on its association with mastitis related traits, the rs43390124 SNP was considered as a potential indicator of mastitis susceptibility.

Type
Research Article
Copyright
Copyright © The Author(s), 2025. Published by Cambridge University Press on behalf of Hannah Dairy Research Foundation

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

Article purchase

Temporarily unavailable

References

Anonymous (2023) Cattle Quantitative Trait Locus (QTL) Database (Cattle QTLdb). Date of access: 02.11.2023. Available at https://www.animalgenome.org/cgi-bin/QTLdb/BT/browseGoogle Scholar
Asaf, VNM, Kumar, A, Rahim, A, Sebastian, R, Mohan, V, Dewangan, P and Panigrahi, M (2014) An overview on single nucleotide polymorphism studies in mastitis research. Veterinary World 7, 416421.CrossRefGoogle Scholar
Ashraf, A and Imran, M (2018) Diagnosis of bovine mastitis: from laboratory to farm. Tropical Animal Health and Production 50, 11931202.CrossRefGoogle ScholarPubMed
Bagheri, M, Miraie-Ashtiani, R, Moradi-Shahrbabak, M, Nejati-Javaremi, A, Pakdel, A, von Borstel, UU, Pimentel, ECG and König, S (2013) Selective genotyping and logistic regression analyses to identify favorable SNP-genotypes for clinical mastitis and production traits in Holstein dairy cattle. Livestock Science 151, 140151.CrossRefGoogle Scholar
Bekele, R, Taye, M, Abebe, G and Meseret, S (2023) Genomic regions and candidate genes associated with milk production traits in Holstein and its crossbred cattle: a review. International Journal of Genomics 2023, 8497453.CrossRefGoogle ScholarPubMed
Buitkamp, J, Ewald, D, Masabanda, J, Bishop, MD and Fries, R (2003) FISH and RH mapping of the bovine alpha (2)/delta calcium channel subunit gene (CACNA2D1). Animal Genetics 34, 309310.CrossRefGoogle Scholar
Chauhan, VPS and Hayes, JF (1991) Genetic parameters for first lactation milk production and composition traits for Holsteins using multivariate restricted maximum likelihood. Journal of Dairy Science 74, 603610.CrossRefGoogle ScholarPubMed
Chegini, A, Hossein-Zadeh, NG, Hosseini-Moghadam, SH and Shadparvar, AA (2018) Genetic correlation estimates between milk production traits, mastitis and different measures of somatic cells in Holstein cows. Animal Production Science 59, 10311038.CrossRefGoogle Scholar
Chegini, A, Hossein-Zadeh, NG, Moghaddam, SHH and Shadparvar, AA (2019) Genetic aspects of some reproductive, udder health and energy status traits in Holstein cows. Theriogenology 130, 17.CrossRefGoogle ScholarPubMed
Deb, R, Singh, U, Kumar, S, Kumar, A, Singh, R, Sengar, G, Mann, S and Sharma, A (2014) Genotypic to expression profiling of bovine calcium channel, voltage-dependent, alpha-2/delta subunit 1 gene, and their association with bovine mastitis among Frieswal (HFX Sahiwal) crossbred cattle of Indian origin. Animal Biotechnology 25, 128138.CrossRefGoogle ScholarPubMed
Deng, G, Yuan, Z, Gao, X, Li, J, Chen, J, Gao, H and Xu, S (2011) Identification mutation of the CACNA2D1 gene and its effect on somatic cell score in cattle. Journal of Applied Animal Research 39, 1518.CrossRefGoogle Scholar
Gabashvili, IS, Sokolowski, BHA, Morton, CC and Giersch, A (2007) Ion channel gene expression in the inner ear. Journal of the Association for Research in Otolaryngology 8, 305328.CrossRefGoogle ScholarPubMed
Gutiérrez-Reinoso, MA, Aponte, PM and García-Herreros, M (2023) Genomic and phenotypic udder evaluation for dairy cattle selection: a review. Animals 13, 124.CrossRefGoogle ScholarPubMed
Ibeagha-Awemu, EM, Peters, SO, Akwanji, KA, Imumorin, IG and Zhao, X (2016) High density genome wide genotyping-by-sequencing and association identifies common and low frequency SNPs, and novel candidate genes influencing cow milk traits. Scientific Reports 6, 31109.CrossRefGoogle ScholarPubMed
Jaglan, K, Ravikumar, D, Sukhija, N, George, L, Alex, R, Vohra, V and Verma, A (2023) Genomic clues of association between clinical mastitis and SNPs identified by ddRAD sequencing in Murrah buffaloes. Animal Biotechnology, 19.Google ScholarPubMed
Koivula, M, Mäntysaari, EA, Negussie, E and Serenius, T (2005) Genetic and phenotypic relationships among milk yield and somatic cell count before and after clinical mastitis. Journal of Dairy Science 88, 827833.CrossRefGoogle ScholarPubMed
Koshchaev, AG, Shchukina I, V, Garkovenko A, V, Ilnitskaya E, V, Radchenko V, V, Bakharev, AA and Khrabrova, LA (2018) Allelic variation of marker genes of hereditary diseases and economically important traits in dairy breeding cattle population. Journal of Pharmaceutical Sciences and Research 10, 15661572.Google Scholar
Krishnamoorthy, P, Goudar, AL, Suresh, KP and Roy, P (2021a) Global and countrywide prevalence of subclinical and clinical mastitis in dairy cattle and buffaloes by systematic review and meta-analysis. Research in Veterinary Science 136, 561586.CrossRefGoogle Scholar
Krishnamoorthy, P, Suresh, KP, Jayamma, KS, Shome, BR, Patil, SS and Amachawadi, RG (2021b) An understanding of the global status of major bacterial pathogens of milk concerning bovine mastitis: a systematic review and meta-analysis (scientometrics). Pathogens (Basel, Switzerland) 10, 545.Google Scholar
Kurz, JP, Yang, Z, Weiss, RB, Wilson, DJ, Rood, KA, Liu, GE and Wang, Z (2019) A genome-wide association study for mastitis resistance in phenotypically well-characterized Holstein dairy cattle using a selective genotyping approach. Immunogenetics 71, 3547.CrossRefGoogle ScholarPubMed
Leitner, G, Lavon, Y, Merin, U, Jacoby, S, Blum, SE, Krifucks, O and Silanikove, N (2019) Increasing the value of raw bulk milk quality based on mammary glands as production units vs. the udder in dairy cows with mastitis. BioRxiv, 567271.Google Scholar
Longeri, M, Polli, M, Strillacci, MG, Samore, AB and Zanotti, M (2006) Quantitative trait loci affecting the somatic cell score on chromosomes 4 and 26 in Italian Holstein cattle. Journal of Dairy Science 89, 31753177.CrossRefGoogle ScholarPubMed
Magotra, A, Gupta, ID, Verma, A, Chaudhari M, V, Arya, A, Vineeth, MR, Kumar, R and Selvan, AS (2017) Characterization and validation of point mutation in exon 19 of CACNA2D1 gene in Karan Fries (Bos taurus × Bos indicus) cattle. Indian Journal of Animal Research 51, 227230.Google Scholar
Magotra, A, Gupta, ID, Verma, A, Alex, R, Mr, V and Ahmad, T (2019) Candidate SNP of CACNA2D1 gene associated with clinical mastitis and production traits in Sahiwal (Bos taurus indicus) and Karan fries (Bos taurus taurus × Bos taurus indicus). Animal Biotechnology 30, 7581.CrossRefGoogle ScholarPubMed
Martins, SAM, Martins, VC, Cardoso, FA, Germano, J, Rodrigues, M, Duarte, C, Bexiga, R, Cardoso, S and Freitas, PP (2019) Biosensors for on-farm diagnosis of mastitis. Frontiers in Bioengineering and Biotechnology 7, 186.CrossRefGoogle ScholarPubMed
Moru, NH, Umoh, JU, Maikai B, V, Barje, PP and Amuta, P (2018) Milk yield losses and cost of clinical mastitis in Friesian× Bunaji crossbred dairy cows in Zaria, Nigeria. Sokoto Journal of Veterinary Sciences 16, 2834.CrossRefGoogle Scholar
Rahman, JU, Kumar, D, Singh, SP, Shahi, BN, Ghosh, AK, Verma, MK, Pathak, A, Dar, AH, Kumar, A and Sharma, RK (2023) Genome-wide identification and annotation of SNPs and their mapping in candidate genes related to milk production and fertility traits in Badri cattle. Tropical Animal Health and Production 55, 19.CrossRefGoogle ScholarPubMed
Rasheed, A, Usman, T and Niaz, K (2020) A review on bovine mastitis with special focus on CD4 as a potential candidate gene for mastitis resistance – a review. Annals of Animal Science 20, 735755.CrossRefGoogle Scholar
Rupp, R and Boichard, D (2003) Genetics of resistance to mastitis in dairy cattle. Veterinary Research 34, 671688.CrossRefGoogle ScholarPubMed
Sambrook, J, Fritsch, EF and Maniatis, T (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press.Google Scholar
Sarıözkan, S (2019) Türkiye'de süt sığırcılığı İşletmelerinde mastitis nedeniyle oluşan finansal kayıpların tahmin edilmesi. Harran Üniversitesi Veteriner Fakültesi Dergisi 8, 147151.CrossRefGoogle Scholar
Silva, AA, Silva, DA, Silva, FF, Costa, CN, Silva, HT, Lopes, PS, Veroneze, R, Thompson, G and Carvalheira, J (2020) GWAS and gene networks for milk-related traits from test-day multiple lactations in Portuguese Holstein cattle. Journal of Applied Genetics 61, 465476.CrossRefGoogle ScholarPubMed
Tommasoni, C, Fiore, E, Lisuzzo, A and Gianesella, M (2023) Mastitis in dairy cattle: on-farm diagnostics and future perspectives. Animals 13, 115.CrossRefGoogle ScholarPubMed
Van Den Berg, I, Hayes, BJ, Chamberlain, AJ and Goddard, ME (2019) Overlap between eQTL and QTL associated with production traits and fertility in dairy cattle. BMC Genomics 20, 118.CrossRefGoogle ScholarPubMed
Weigel, KA and Shook, GE (2018) Genetic selection for mastitis resistance. Veterinary Clinics: Food Animal Practice 34, 457472.Google ScholarPubMed
Yang, F, Zhang, S, Shang, X, Wang, X, Yan, Z, Li, H and Li, J (2019) Antimicrobial resistance and virulence genes of Enterococcus faecalis isolated from subclinical bovine mastitis cases in China. Journal of Dairy Science 102, 140144.CrossRefGoogle ScholarPubMed
Yuan, ZR, Li, J, Liu, L, Zhang, LP, Zhang, LM, Chen, C, Chen, XJ, Gao, X, Li, JY and Chen, JB (2011a) Single nucleotide polymorphism of CACNA2D1 gene and its association with milk somatic cell score in cattle. Molecular Biology Reports 38, 51795183.CrossRefGoogle Scholar
Yuan, Z, Li, J, Zhang, L, Zhang, L, Chen, C, Chen, X, Gao, X, Li, J, Chen, J and Gao, H (2011b) Novel SNPs polymorphism of bovine CACNA2D1 gene and their association with somatic cell score. African Journal of Biotechnology 10, 17891793.Google Scholar
Zavadilová, L, Kašná, E, Krupová, Z and Brzáková, M (2020) Genetic parameters for clinical mastitis in Czech Holstein cattle. Czech Journal of Animal Science 65, 269279.CrossRefGoogle Scholar
Zhang, Q, Boichard, D, Hoeschele, I, Ernst, C, Eggen, A, Murkve, B, Pfister-Genskow, M, Witte, LA, Grignola, FE and Uimari, P (1998) Mapping quantitative trait loci for milk production and health of dairy cattle in a large, outbred pedigree. Genetics 149, 19591973.CrossRefGoogle Scholar
Supplementary material: File

Daldaban et al. supplementary material

Daldaban et al. supplementary material
Download Daldaban et al. supplementary material(File)
File 127.7 KB