We consider numerically a Lagrangian view of turbulent mixing in two-layer stably stratified parallel shear flow. By varying the ratio of shear layer depth to density interface thickness, these flows are prone to either a primary Kelvin–Helmholtz instability (KHI) or to a primary Holmboe wave instability (HWI). These instabilities are conventionally thought to mix qualitatively differently; by vortical ‘overturning’ of the density interface induced by KHI, or by turbulent ‘scouring’ on the edges of the density interface induced by HWI. By tracking Lagrangian particles in direct numerical simulations, so that the fluid buoyancy sampled along particle paths provides a particular Lagrangian measure of mixing, we investigate the validity of this overturning/scouring classification. The timing of mixing events experienced by particles inside and outside the interface is qualitatively different in simulations exhibiting KHI and HWI. The root mean square (r.m.s.) buoyancy for particles that start with the same buoyancy is actually larger for HWI-associated flows than for KHI-associated flows for the same bulk Richardson number $Ri_b$, implying heterogeneous mixing along particle paths for HWI. The number of particles starting close to the mid-plane of the interface which experience a change in sign in the local fluid buoyancy (and hence end up on the opposite side of the mid-plane after mixing) is compared for KHI and HWI in flows with various $Ri_b$. Perhaps surprisingly, for HWI with a large $Ri_b$, more than half of the particles that start near the mid-plane end up on the opposite side of the mid-plane.

The interaction of near-inertial waves (NIWs) with submesoscale vorticity filaments is explored using theory and simulations. We study three idealised set-ups representative of submesoscale flows allowing for $O(1)$ or greater Rossby numbers. First, we consider the radiation of NIWs away from a cyclonic filament and develop scalings for the decay of wave energy in the filament. Second, we introduce broad anticyclonic regions that separate the cyclonic filaments mimicking submesoscale eddy fields and analyse the normal modes of this system. Third, we extend this set-up to consider the vertical propagation and the radiation of NIW energy. We identify a key length scale $L_m$, dependent on the strength of the filament, stratification and vertical scale of the waves, that when compared with the horizontal scales of the background flow determines the NIW behaviour. A generic expression for the vertical group velocity is derived that highlights the importance of horizontal gradients for vertical wave propagation. An overarching theme of the results is that NIW radiation, both horizontally and vertically, is most efficient when $L_m$ is comparable to the length scales of the background flow.

Understanding the interplay between buoyancy and fluid motions within stably stratified shear layers is crucial for unravelling the contribution of flow structures to turbulent mixing. In this study, we examine statistically the local relationship between stratification and fluid deformation rate in wave and turbulent regimes, using experimental datasets obtained from a stratified inclined duct (SID) containing fluids of different densities that form an exchange flow. We introduce rotational and shear components of varying strength within the vorticity and a family of coherent gradient Richardson numbers ($Ri_C$), ratios related to the buoyancy frequency and the strength of either the rotational or shearing motion. Conditional statistical analysis reveals that both shear and stratification intensity affect the probability distribution of the $Ri_C$, with extreme events occurring more frequently in areas of weak stratification. In the wave regime, we identify the persistence of fast-spin vortices within the strongly stratified density interface. However, scouring of the density interface is primarily driven by shearing motions, with baroclinic torque making a notable contribution to enstrophy transport. In the turbulent regime, rigid-body rotations occur at significantly shorter time scales than that associated with the local buoyancy frequency, making them more disruptive to stratification than shear. Additionally, correlation analysis reveals that irrotational strain distorts stable stratification similarly to shearing motions, but is weaker than both shearing and rotational motions and less likely to have a time scale longer than that related to the buoyancy frequency. Moreover, we observed that the interplay between rotational and shearing motions intensifies as stratification increases. Finally, a comparison of length scales along the shear layers highlights the $Ri_C$ as a valuable measure of the relative sizes of different motions compared with the Ozmidov scale and shows that stratification can influence sub-Ozmidov scales through baroclinic torque. This study highlights the critical impact of the type, strength and location of fluid deformations on localised mixing, providing new insights into the role of rotational motions in shear-driven stratified flows.

Layer formation can occur within stratified fluids, often associated with the effect of ‘double diffusion’ where the fluid buoyancy depends on two components with differing molecular diffusivities (e.g. heat and salt in seawater). However, since layering also occurs in one-component stratified fluids, the generation mechanism for layers is often unclear. In this paper, we present a framework that unifies multiple-layer generation mechanisms across both one- and two-component stratified fluids. We demonstrate how these mechanisms can be assessed using simulations of double-diffusive intrusions. Our simulations illustrate the importance of the negative turbulent diffusivity for buoyancy in contributing to layer formation.

Buoyancy-driven exchange flows in geophysical contexts often exhibit significant interfacial turbulence leading to a partially mixed intermediate layer between two counterflowing layers. In this paper we perform a three-layer hydraulic analysis of such flows, highlighting the dynamical importance of the middle mixed layer. Our analysis is based on the viscous, shallow water, Boussinesq equations and includes the effects of mixing as a non-hydrostatic pressure forcing. We demonstrate the superior predictive accuracy of three-layer hydraulics over the more classical two-layer approach by applying it to direct numerical simulation data in stratified inclined duct exchange flows where turbulence is controlled by a modest slope of the duct. The three-layer model predicts a region bounded by two control points in the middle of the duct, linked to the onset of instability and turbulence, whereas a two-layer model only predicts one control point. We show that the nonlinear characteristics of the three-layer model correspond to linear long waves perturbing a three-layer mean flow. We also provide the first evidence of long-wave resonance, as well as resonance between long and short waves, and their connection to turbulence. These results challenge current parameterisations for turbulent transport, which typically overlook long waves and internal hydraulics induced by streamwise variations of the flow.

We use direct numerical simulations to examine the onset of stratified turbulence triggered by the zigzag instability recently identified in columnar Taylor–Green vortices (Guo et al. 2024, J. Fluid Mech., vol. 997, A34) and its role in layer formation within the flow. The study focuses on Froude numbers $0.125 \leqslant \textit{Fr} \leqslant 2.0$ and Reynolds numbers ${\textit{Re}}$ ranging from 800 to 3200. The breakdown of the freely evolving vortex array is driven by local density overturns, combining shear and convective mechanisms initiated by the primary zigzag instability. Our results show a linear relationship between the peak buoyancy Reynolds number ${{\textit{Re}}}_b^{\star }$, driven by the zigzag instability, and ${\textit{Re}}\, {\textit{Fr}}^2$. When the flow does not exhibit local shear or convective instability, the value of ${{\textit{Re}}}_b^{\star }$ falls below unity. Both density and momentum layers arise from the zigzag instability: horizontal velocity layers are strong and persistent, while density layers are weaker and more transient. The vertical scale of the mean shear layers increases with ${\textit{Fr}}$ for ${\textit{Fr}} \leqslant 1$, shows weak dependence on ${\textit{Re}}$, and agrees well with the length scale associated with the fastest-growing linear mode of the zigzag instability. Further analysis in the sorted buoyancy coordinate highlights the role of density overturns caused by the zigzag instability in forming buoyancy layers during the transition to turbulence.

Double-diffusive convection can arise when the fluid density is set by multiple species which diffuse at different rates. Different flow regimes are possible depending on the distribution of the diffusing species, including salt fingering and diffusive convection. Flows arising from diffusive convection commonly exhibit step-like density profiles with sharp density interfaces separated by well-mixed layers. The formation of density layers is also seen in stratified turbulence, where a framework based on sorted density coordinates (Winters & D’Asaro 1996 J. Fluid Mech. 317, 179–193) has been used to diagnose layer formation (Zhou et al. 2017 J. Fluid Mech. 823, 198–229; Taylor & Zhou 2017 J. Fluid Mech. 823, R5). In this framework, the evolution of the sorted density profile can be expressed solely in terms of the eddy diffusivity, $\kappa _e$. Here, we use the same framework to diagnose layer formation in two-dimensional simulations of double-diffusive convection. We show that $\kappa _e$ is negative everywhere, with the antidiffusive effect strongest in ‘well-mixed’ layers where a positive diffusion coefficient may be expected. By considering a decomposition of the budget of the square of the Brunt-Väisälä frequency $\partial N^2_*/\partial t$, we demonstrate that the density layers are maintained by fundamentally different processes than in single-component stratified turbulence. In more complicated flows where stratified turbulence and double-diffusive convection can coexist, this framework could provide a method to distinguish between the mechanisms responsible for generating density layers.

Inspired by laboratory experiments showing internal waves generated by a plume impinging upon a stratified fluid layer (Ansong & Sutherland. 2010 J. Fluid Mech. 648, 405–434), we perform large eddy simulations in three dimensions to examine the structure and source of internal waves emanating from the top of a plume that rises vertically into stratification whose strength ranges over two orders of magnitude between different simulations. Provided the plume is sufficiently energetic to penetrate into the stratified layer, internal waves are generated with frequencies in a relatively narrow band moderately smaller than the buoyancy frequency. Through adaptations of ray theory including viscosity and use of dynamic mode decomposition, we show that the waves originate from within the turbulent flow rather than at the turbulent/non-turbulent interface between the fountain top and the surrounding stratified fluid.

Benthic macroalgae (including brown macroalgae or kelp) constitute one of the largest contributors to coastal primary production, but their ability to store and sequester carbon remains uncertain. Here, we use a numerical model of the flow/kelp interactions to study how tidal currents interact with an idealised numerical model of a giant kelp (Macrocystis pyrifera) forest, intending to better understand the potential for kelp growth in nutrient-limited conditions and the export of important tracers such as dissolved organic carbon. We calibrate and test our model using observations of currents within and surrounding a kelp forest in Southern California. By varying the density of kelp in our model, we find that there is a kelp density that maximises the export of tracer released from the kelp forest. Since the tracer advection/diffusion equation is linear with respect to the tracer concentration, the same kelp density corresponds to the maximum uptake for a tracer with a constant far-field concentration. The density at which this maximum occurs coincides with the density typical of natural kelp forests, where kelp growth may be limited by the uptake of dissolved nutrients from the surrounding water. Additionally, the drag induced on the tidal currents by the kelp forest results in a mean circulation through the kelp forest and a mean displacement of the kelp forest canopy.

We use large-eddy simulations to study the penetration of a buoyant plume carrying a passive tracer into a stably stratified layer with constant buoyancy frequency. Using a buoyancy-tracer volume distribution, we develop a method for objectively partitioning plume fluid in buoyancy-tracer space into three regions, each of which corresponds to a coherent region in physical space. Specifically, we identify a source region where undiluted plume fluid enters the stratified layer, a transport region where much of the transition from undiluted to mixed fluid occurs in the plume cap and an accumulation region corresponding to a radially spreading intrusion. This method enables quantification of different measures of turbulence and mixing within each of the three regions, including potential energy and turbulent kinetic energy dissipation rates, an activity parameter and the instantaneous mixing efficiency. We find that the most intense buoyancy gradients lie in a thin layer at the cap of the penetrating plume. This provides the primary stage of mixing between plume and environment and exhibits a mixing efficiency around 50 %. Newly generated mixtures of environmental and plume fluid join the intrusion and experience relatively weak turbulence and buoyancy gradients. As the intrusion spreads radially, environmental fluid surrounding the intrusion is mixed into the intrusion with moderate mixing efficiency. This dominates the volume of environmental fluid entrained into the region containing plume fluid. However, the ‘strongest’ entrainment, as measured by the specific entrainment rate, is largest in the plume cap, where the most buoyant environmental fluid is entrained.

We investigate the dynamics of a columnar Taylor–Green vortex array under strong stratification, focusing on Froude numbers $0.125\leq Fr \leq 1.0$, with the aim of identifying and understanding the primary instabilities that lead to the vortices’ breakdown. Linear stability analysis reveals that the fastest-growing vertical wavenumber scales with $Fr^{-1}$, while the dimensionless growth rate remains approximately constant. The most unstable eigenmode, identified as the mixed hyperbolic mode by Hattori et al. (J. Fluid Mech., vol. 909, 2021, A4), bears significant similarities to the zigzag instability, first discovered by Billant & Chomaz (J. Fluid Mech., vol. 418, 2000, pp. 167–188). Direct numerical simulations further confirm that the zigzag instability is crucial in amplifying initial random perturbations to finite amplitude, with the flow structure and modal growth rate consistent with the linear stability analysis. In particular, the characteristic vertical length scale of turbulence matches that of the fastest-growing linear mode. These findings underscore the broader relevance of the zigzag instability mechanism beyond its initial discovery in vortex pairs, demonstrating its role in facilitating direct energy transfer from vertically uniform vortical motions to a characteristic vertical length scale proportional to $Fr$ in strongly stratified flows.

We introduce a geometric analysis of turbulent mixing in density-stratified flows based on the alignment of the density gradient in two orthogonal bases that are locally constructed from the velocity gradient tensor. The first basis connects diapycnal mixing to rotation and shearing motions, building on the recent ‘rortex–shear decomposition’ in stratified shear layers (Jiang et al., J. Fluid Mech., vol. 947, 2022, A30), while the second basis connects mixing to the principal axes of the viscous dissipation tensor. Applying this framework to datasets taken in the stratified inclined duct laboratory experiment reveals that density gradients in locations of high shear tend to align preferentially (i) along the direction of minimum dissipation and (ii) normal to the plane spanned by the rortex and shear vectors. The analysis of the local alignment across increasingly turbulent flows offers new insights into the intricate relationship between the density gradient and dissipation, and thus diapycnal mixing.

The stratified inclined duct (SID) sustains an exchange flow in a long, gently sloping duct as a model for continuously forced density-stratified flows such as those found in estuaries. Experiments have shown that the emergence of interfacial waves and their transition to turbulence as the tilt angle is increased appears to be linked to a threshold in the exchange flow rate given by inviscid two-layer hydraulics. We uncover these hydraulic mechanisms by (i) using recent direct numerical simulations (DNS) providing full flow data in the key flow regimes (Zhu et al., J. Fluid Mech., vol. 969, 2023, A20), (ii) averaging these DNS into two layers, and (iii) using an inviscid two-layer shallow-water and instability theory to diagnose interfacial wave behaviour and provide physical insight. The laminar flow is subcritical and stable throughout the duct and hydraulically controlled at the ends of the duct. As the tilt is increased, the flow becomes supercritical everywhere and unstable to long waves. An internal jump featuring stationary waves first appears near the centre of the duct, then leads to larger-amplitude travelling waves, and to stronger jumps, wave breaking and intermittent turbulence at the largest tilt angle. Long waves described by the (nonlinear) shallow-water equation are interpreted locally as linear waves on a two-layer parallel base flow described by the Taylor–Goldstein equation. This link helps us to interpret long-wave instability and contrast it with short-wave (e.g. Kelvin–Helmholtz) instability. Our results suggest a transition to turbulence in SID through long-wave instability relying on vertical confinement by the top and bottom walls.

The stratified inclined duct (SID) experiment consists of a zero-net-volume exchange flow in a long tilted rectangular duct, which allows the study of realistic stratified shear flows with sustained internal forcing. We present the first three-dimensional direct numerical simulations (DNS) of SID to explore the transitions between increasingly turbulent flow regimes first described by Meyer & Linden (J. Fluid Mech., vol. 753, 2014, pp. 242–253). We develop a numerical set-up that faithfully reproduces the experiments and sustains the flow for arbitrarily long times at minimal computational cost. We recover the four qualitative flow regimes found experimentally in the same regions of parameter space: laminar flow, waves, intermittent turbulence and fully developed turbulence. We find good qualitative and quantitative agreement between DNS and experiments and highlight the added value of DNS to complement experimental diagnostics and increase our understanding of the transition to turbulence, both temporally (laminar/turbulent cycles) and parametrically (as the tilt angle of the duct and the Reynolds number are increased). These results demonstrate that numerical studies of SID – and deeper integration between simulations and experiments – have the potential to lead to a better understanding of stratified turbulence.

Buoyant material such as microplastics accumulate near the ocean surface in regions with convergent surface currents where they can be harmful to marine life. Here, we use large eddy simulations to investigate the transport and accumulation of buoyant material in a turbulent ocean mixed layer under combined wind and convection forcing. We model non-inertial buoyant particles with a combination of buoyant tracers and Lagrangian surface particles, which allows us to explore a wide range of particle buoyancies. Surface cooling drives convection, and under this regime persistent convective vortices form that trap buoyant particles, leading to large concentrations. Despite their small size, the convective vortices exhibit a bias towards cyclonic vorticity that has not been reported previously. Based on an analysis of Lagrangian trajectories, the average time that a particle spends inside a convective vortex is long enough for planetary vorticity to become important and further vortex stretching causes an exponential increase in vorticity. When wind forcing is included, there is a transition from convective cells to longitudinal wind rolls with three distinct flow patterns observed under weak, moderate and strong wind forcing. For sufficiently weak winds, convective vortices survive but are less effective at trapping buoyant material. Under strong wind forcing, convective vortices no longer exist, but some clustering occurs in regions of high speed associated with longitudinal wind rolls. We quantify the degree of clustering using the Gini coefficient and find that clustering is strongly influenced by the relative size of the friction and convective velocities and the particle buoyancy.

Motivated by observations of turbulence in the strongly stratified ocean thermocline, we use direct numerical simulations to investigate the interaction of a sinusoidal shear flow and a large-amplitude internal gravity wave. Despite strong nonlinearities in the flow and a lack of scale separation, we find that linear ray-tracing theory is qualitatively useful in describing the early development of the flow as the wave is refracted by the shear. Consistent with the linear theory, the energy of the wave accumulates in regions of negative mean shear where we observe evidence of convective and shear instabilities. Streamwise-aligned convective rolls emerge the fastest, but their contribution to irreversible mixing is dwarfed by shear-driven billow structures that develop later. Although the wave strongly distorts the buoyancy field on which these billows develop, the mixing efficiency of the subsequent turbulence is similar to that arising from Kelvin–Helmholtz instability in a stratified shear layer. We run simulations at Reynolds numbers Re of 5000 and 8000, and vary the initial amplitude of the internal gravity wave. For high values of initial wave amplitude, the results are qualitatively independent of $Re$. Smaller initial wave amplitudes delay the onset of the instabilities, and allow for significant laminar diffusion of the internal wave, leading to reduced turbulent activity. We discuss the complex interaction between the mean flow, internal gravity wave and turbulence, and its implications for internal wave-driven mixing in the ocean.