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We derive the scale-by-scale uncertainty energy budget equation and demonstrate theoretically and computationally the presence of a self-similar equilibrium cascade of decorrelation in an inertial range of scales during the time range of power-law growth of uncertainty in statistically stationary homogeneous turbulence. This cascade is predominantly inverse and driven by compressions of the reference field’s relative deformation tensor and their alignments with the uncertainty velocity field. Three other subdominant cascade mechanisms are also present, two of which are forward and also dominated by compressions and one of which, the weakest and the only nonlinear one of the four, is inverse. The uncertainty production and dissipation scalings which may follow from the self-similar equilibrium cascade of decorrelation lead to power-law growths of the uncertainty integral scale and the average uncertainty energy which are also investigated. Compressions are key not only to chaoticity, as previously shown, but also to stochasticity.
When a liquid film on a horizontal plate is driven in motion by a shear stress, surface waves are easily generated. This paper studies such flow at moderate Reynolds numbers, where the surface tension and inertial force are equally important. The governing equations for two-dimensional flows are derived using the long-wave approximation along with the integral boundary-layer theory. For small disturbances, the dispersion relation and neutral curves are determined by the linear stability analysis. For finite-amplitude perturbations, the numerical simulation suggests that the oscillations generated by the perturbation in a certain place continuously spread to the surrounding areas. When the effects of surface tension and gravity reach equilibrium, steady-state solutions will emerge, which include two cases: solitary waves and periodic waves. The former have heteroclinic trajectories between two stationary points, while the latter include five patterns at different parameters. In addition, there are also periodic waves that do not converge after a long period of time. During these evolution processes, strange attractors appear in the phase space. By examining the Poincaré section and the sensitivity to initial values, we demonstrate that these waves can be divided into two types: quasi-periodic and chaotic solutions. The specific type depends on parameters and initial conditions.
Considers how chaos in the Metamorphoses is a non-linear state and force that disturbs the structural hierarchies that we tend to associate with the formed world. Beginning with a rereading of the cosmogony from book 1 of the Metamorphoses, we observe Ovid combining a range of different philosophical systems including materialist physics and creationist cosmogony. Ovid introduces a Platonic demiurge, whose role it is to place order onto this chaotic system; however, his introduction is a false dawn, as chaos, far from being banished to a primordial past, continually intervenes in the created world, disturbing any sense of a fixed or stable reality. This is matched by the intertextual chaos encountered by the reader, who is left to restitch the cosmos from disparate elements, including conflicting philosophical systems and mythological narratives. The Timaeus provides an important counterweight to Ovid’s cosmogony; on the one hand, the recourse to a more perfect and eternal realm beyond the experience of the physical senses is ripe for deconstruction by Ovid. When read alongside the opening of the Metamorphoses, Plato’s creationist cosmogony appears less fixed and more playful than has been traditionally considered.
The main ideas are introduced in a historical context. Beginning with phase retrieval and ending with neural networks, the reader will get a sense of the book’s broad scope.
This chapter serves as an intuitive introduction to dynamical systems within the realm of biological systems, through visual representations of state space dynamics. Biological examples and experimental realizations are described to demonstrate how dynamical systems concepts are applicable in solving fundamental problems in cell biology. Differential equations are taken as typical of dynamical systems, and we explain topics such as nullcline and fixed points, linear stability analysis, and attractors, elucidating their significance using systems such as gene toggle switches. The introduction of limit cycles and the Poincaré–Bendixson theorem in two-dimensional systems is followed by examples such as the Brusselator and the repressilator system. Furthermore, we explore the basin structure in multi-attractor systems and provide detailed explanations using toggle switch systems to illustrate time-scale separation between variables and adiabatic elimination of variables. Several instances of co-dimension 1 bifurcations commonly observed in biological systems are presented, with a discussion of their biological significance in processes like cell differentiation. Finally, chaos theory is introduced.
Feigenbaum universality is shown to occur in subcritical shear flows. Our testing ground is the counter-rotation regime of the Taylor–Couette flow, where numerical calculations are performed within a small periodic domain. The accurate computation of up to the seventh period-doubling bifurcation, assisted by a purposely defined Poincaré section, has enabled us to reproduce the two Feigenbaum universal constants with unprecedented accuracy in a fluid flow problem. We have further devised a method to predict the bifurcation diagram up to the accumulation point of the cascade based on the detailed inspection of just the first few period-doubling bifurcations. Remarkably, the method is applicable beyond the accumulation point, with predictions remaining valid, in a statistical sense, for the chaotic dynamics that follows.
The transition to chaos in the subcritical regime of counter-rotating Taylor–Couette flow is investigated using a minimal periodic domain capable of sustaining coherent structures. Following a Feigenbaum cascade, the dynamics is found to be remarkably well approximated by a simple discrete map that admits rigorous proof of its chaotic nature. The chaotic set that arises for the map features densely distributed periodic points that are in one-to-one correspondence with unstable periodic orbits (UPOs) of the Navier–Stokes system. This supports the increasingly accepted view that UPOs may serve as the backbone of turbulence and, indeed, we demonstrate that it is possible to reconstruct every statistical property of chaotic fluid flow from UPOs.
We conduct direct numerical simulations to investigate the synchronisation of Kolmogorov flows in a periodic box, with a focus on the mechanisms underlying the asymptotic evolution of infinitesimal velocity perturbations, also known as conditional leading Lyapunov vectors. This study advances previous work with a spectral analysis of the perturbation, which clarifies the behaviours of the production and dissipation spectra at different coupling wavenumbers. We show that, in simulations with moderate Reynolds numbers, the conditional leading Lyapunov exponent can be smaller than a lower bound proposed previously based on a viscous estimate. A quantitative analysis of the self-similar evolution of the perturbation energy spectrum is presented, extending the existing qualitative discussion. The prerequisites for obtaining self-similar solutions are established, which include an interesting relationship between the integral length scale of the perturbation velocity and the local Lyapunov exponent. By examining the governing equation for the dissipation rate of the velocity perturbation, we reveal the previously neglected roles of the strain rate and vorticity perturbations, and uncover their unique geometrical characteristics.
Randomness is one of the most important characteristics of turbulence, but its origin remains an open question. By means of a ‘thought experiment’ via several clean numerical experiments based on the Navier–Stokes equations for two-dimensional turbulent Kolmogorov flow, we reveal a new phenomenon, which we call the ‘noise-expansion cascade’ whereby all micro-level noises/disturbances at different orders of magnitudes in the initial condition of Navier–Stokes equations enlarge consistently, say, one by one like an inverse cascade, to macro level. More importantly, each noise/disturbance input may greatly change the macro-level characteristics and statistics of the resulting turbulence, clearly indicating that micro-level noise/disturbance might have great influence on macro-level characteristics and statistics of turbulence. In addition, the noise-expansion cascade closely connects randomness of micro-level noise/disturbance and macro-level disorder of turbulence, thus revealing an origin of randomness of turbulence. This also highly suggests that unavoidable thermal fluctuations must be considered when simulating turbulence, even if such fluctuations are several orders of magnitudes smaller than other external environmental disturbances. We hope that the ‘noise-expansion cascade’, as a fundamental property of the Navier–Stokes equations, could greatly deepen our understandings about turbulence, and also be helpful for attacking the fourth millennium problem posed by the Clay Mathematics Institute in 2000.
An important parameter characterising the synchronisation of turbulent flows is the threshold coupling wavenumber. This study investigates the relationship between the threshold coupling wavenumber and the leading Lyapunov vector using large eddy simulations and the SABRA model. Various subgrid-scale stress models, Reynolds numbers and different coupling methods are examined. A new scaling relation is identified for the leading Lyapunov exponents in large eddy simulations, showing that they approximate those of filtered direct numerical simulations. This interpretation provides a physical basis for results related to the Lyapunov exponents of large eddy simulations, including those related to synchronisation. Synchronisation experiments show that the peak wavenumber of the energy spectrum of the leading Lyapunov vector coincides with the threshold coupling wavenumber, in large eddy simulations of box turbulence with standard Smagorinsky or dynamic mixed models as well as in the SABRA model, replicating results from direct numerical simulations of box turbulence. Although the dynamic Smagorinsky model exhibits different behaviour, the totality of the results suggests that the relationship is an intrinsic property of a certain class of chaotic systems. We also confirm that conditional Lyapunov exponents characterise the synchronisation process in indirectly coupled systems as they do in directly coupled ones, with their values insensitive to the nature of the master flow. These findings advance the understanding of the role of the Lyapunov vector in the synchronisation of turbulence.
Using clean numerical simulation (CNS) in which artificial numerical noise is negligible over a finite, sufficiently long interval of time, we provide evidence, for the first time, that artificial numerical noise in direct numerical simulation (DNS) of turbulence is approximately equivalent to thermal fluctuation and/or stochastic environmental noise. This confers physical significance on the artificial numerical noise of DNS of the Navier–Stokes equations. As a result, DNS on a fine mesh should correspond to turbulence under small internal/external physical disturbance, whereas DNS on a sparse mesh corresponds to turbulent flow under large physical disturbance. The key point is that all of them have physical meanings and so are correct in terms of their deterministic physics, even if their statistics are quite different. This is illustrated herein. Our paper provides a positive viewpoint regarding the presence of artificial numerical noise in DNS.
Paradoxes are an inevitable part of life. The relationship between paradox and the paradox of inquiry is presented. Next, the role of chaos is analyzed, as also documented through an experiment that chaos instigates creativity. Comparing two firms, one orderly, the other in chaos, it appears that, paradoxically, the chaotic firm had more patents and published more papers than the stable one. These chaos-to-order inspirations prompted leaders to facilitate connections, colocation, inclusion, and working together. Dee Hock, the founding CEO of Visa International, coined the name “chaordic era”. Chaos and synchronization are closely related. The paradox is that probably only unorganized, chaotic systems can generate higher-order synchronization (e.g., blinking fireflies, self-organizing V-shaped flocks of birds, or strangers in an audience eventually catching a common clapping rhythm). Artificial intelligence (AI) paradoxes are mentioned (e.g., Moravec’s paradox: for AI, the hard problems are easy, and the easy problems are hard). Other examples: On the one hand, AI aims to increase automation; on the other hand, it also requires more human involvement to reflect on the insights generated (automation paradox). AI generates job losses; however, it also creates new jobs (e.g., providing the support systems for those newly unemployed: the transition paradox)
Guerini and Moneta (2017) have developed a sophisticated method of providing empirical evidence in support of the relations of causal dependence that macroeconomists engaging in agent-based modelling believe obtain in the target system of their models. The paper presents three problems that get in the way of successful applications of this method: problems that have to do with the potential chaos of the target system, the non-measurability of variables standing for individual or aggregate expectations, and the failure of macroeconomic aggregates to screen off individual expectations from the microeconomic quantities that constitute the aggregates. The paper also discusses the in-principle solvability of the three problems and uses a prominent agent-based model (the Keynes + Schumpeter model of the macroeconomy) as a running example.
What are the contexts that give rise to cooperation as opposed to conflict? When should we love thy neighbor, turn the other cheek, or escalate? Game theory is an effort to formalize this problem such that we can ask what decisions we should make when the consequences of those decisions depend on the decisions of others. By this accounting, war is a game, as is negotiation, rock-paper-scissors, and love making. The difference is in the payoffs. Being rational is about making decisions that lead to the best outcomes. The hawks and doves of political foreign policy – who advocate for more or less aggressive military intervention – are rational beings in this world, because the nature of the payoffs demands certain kinds of responses. The pragmatics of high stakes games underpin quotes like John F. Kennedy’s "We can secure peace only by preparing for war." But is Kennedy’s statement rational by the logic of the game in which it is embedded? Is it rational when games of conflict are played repeatedly in a network of global interactions? By combining game theory with network science, we can make some progress toward understanding these issues.
In this work, the shape of a bluff body is optimized to mitigate velocity fluctuations of turbulent wake flows based on large-eddy simulations (LES). The Reynolds-averaged Navier–Stokes method fails to capture velocity fluctuations, while direct numerical simulations are computationally prohibitive. This necessitates using the LES method for shape optimization given its scale-resolving capability and relatively affordable computational cost. However, using LES for optimization faces challenges in sensitivity estimation as the chaotic nature of turbulent flows can lead to the blowup of the conventional adjoint-based gradient. Here, we propose using the regularized ensemble Kalman method for the LES-based optimization. The method is a statistical optimization approach that uses the sample covariance between geometric parameters and LES predictions to estimate the model gradient, circumventing the blowup issue of the adjoint method for chaotic systems. Moreover, the method allows for the imposition of smoothness constraints with one additional regularization step. The ensemble-based gradient is first evaluated for the Lorenz system, demonstrating its accuracy in the gradient calculation of the chaotic problem. Further, with the proposed method, the cylinder is optimized to be an asymmetric oval, which significantly reduces turbulent kinetic energy and meander amplitudes in the wake flows. The spectral analysis methods are used to characterize the flow field around the optimized shape, identifying large-scale flow structures responsible for the reduction in velocity fluctuations. Furthermore, it is found that the velocity difference in the shear layer is decreased with the shape change, which alleviates the Kelvin–Helmholtz instability and the wake meandering.
This is the first of a two-part paper. We formulate a data-driven method for constructing finite-volume discretizations of an arbitrary dynamical system's underlying Liouville/Fokker–Planck equation. A method is employed that allows for flexibility in partitioning state space, generalizes to function spaces, applies to arbitrarily long sequences of time-series data, is robust to noise and quantifies uncertainty with respect to finite sample effects. After applying the method, one is left with Markov states (cell centres) and a random matrix approximation to the generator. When used in tandem, they emulate the statistics of the underlying system. We illustrate the method on the Lorenz equations (a three-dimensional ordinary differential equation) saving a fluid dynamical application for Part 2 (Souza, J. Fluid Mech., vol. 997, 2024, A2).
As most mathematically justifiable Lagrangian coherent structure detection methods rely on spatial derivatives, their applicability to sparse trajectory data has been limited. For experimental fluid dynamicists and natural scientists working with Lagrangian trajectory data via passive tracers in unsteady flows (e.g. Lagrangian particle tracking or ocean buoys), obtaining material measures of fluid rotation or stretching is an active topic of research. To facilitate frame-indifferent investigations in unsteady and sparsely sampled flows, we present a novel approach to quantify fluid stretching and rotation via relative Lagrangian velocities. This technique provides a formal objective extension of quasi-objective metrics to unsteady flows by accounting for mean flow behaviour. For extremely sparse experimental data, fluid structures may be significantly undersampled and the mean flow behaviour becomes difficult to quantify. We provide a means to maintain the accuracy of our novel sparse flow diagnostics in extremely sparse sampling scenarios, such as ocean buoy data and Lagrangian particle tracking. We use data from multiple numerical and experimental flows to show that our methods can identify structures beyond existing limits of sparse, frame-indifferent diagnostics and exhibit improved interpretability over common frame-dependent diagnostics.
High-dimensional dynamical systems projected onto a lower-dimensional manifold cease to be deterministic and are best described by probability distributions in the projected state space. Their equations of motion map onto an evolution operator with a deterministic component, describing the projected dynamics, and a stochastic one representing the neglected dimensions. This is illustrated with data-driven models for a moderate-Reynolds-number turbulent channel. It is shown that, for projections in which the deterministic component is dominant, relatively ‘physics-free’ stochastic Markovian models can be constructed that mimic many of the statistics of the real flow, even for fairly crude operator approximations, and this is related to general properties of Markov chains. Deterministic models converge to steady states, but the simplified stochastic models can be used to suggest what is essential to the flow and what is not.
Microbes play a primary role in wide-ranging biogeochemical and physiological processes, where ambient fluid flows are responsible for cell dispersal as well as mixing of dissolved resources, signalling molecules and biochemical products. Determining the simultaneous (and often coupled) transport properties of actively swimming cells together with passive scalars is key to understanding and ultimately predicting these complex processes. In recent work, Ran & Arratia (J. Fluid Mech., vol. 988, 2024, A25) present the striking observation that dilute concentrations of swimming bacteria severely hinder scalar transport through Lagrangian vortex boundaries in a chaotic flow. Analysis of rotation-dominated regions suggests that local accumulation of bacteria enhances the strength of transport barriers and highlights the role of understudied elliptical Lagrangian coherent structures in bacterial and multicomponent transport.
We investigate the effects of bacterial activity on the mixing and transport properties of a passive scalar in time-periodic flows in experiments and in a simple model. We focus on the interactions between swimming Escherichia coli and the Lagrangian coherent structures (LCSs) of the flow, which are computed from experimentally measured velocity fields. Experiments show that such interactions are non-trivial and can lead to transport barriers through which the scalar flux is significantly reduced. Using the Poincaré map, we show that these transport barriers coincide with the outermost members of elliptic LCSs known as Lagrangian vortex boundaries. Numerical simulations further show that elliptic LCSs can repel elongated swimmers and lead to swimmer depletion within Lagrangian coherent vortices. A simple mechanism shows that such depletion is due to the preferential alignment of elongated swimmers with the tangents of elliptic LCSs. Our results provide insights into understanding the transport of micro-organisms in complex flows with dynamical topological features from a Lagrangian viewpoint.