Prunus species are important commercial fruit (plums, apricot, peach and cherries), nut (almond) and ornamental trees cultivated broadly worldwide. This review compiles information from available literature on Prunus species in regard to gene flow and hybridization within this complex of species. The review serves as a resource for environmental risk assessment related to pollen mediated gene flow and the release of transgenic Prunus. It reveals thatPrunus species, especially plums and cherries show high potential for transgene flow. A range of characteristics including; genetic diversity, genetic bridging capacity, inter- and intra-specific genetic compatibility, self sterility (in most species), high frequency of open pollination, insect assisted pollination, perennial nature, complex phenotypic architecture (canopy height, heterogeneous crown, number of flowers produced in an individual plant), tendency to escape from cultivation, and the existence of ornamental and road sidePrunus species suggest that there is a tremendous and complicated ability for pollen mediated gene movement amongPrunus species. Ploidy differences amongPrunus species do not necessarily provide genetic segregation. The characteristics ofPrunu s species highlight the complexity of maintaining coexistence between GM and non-GMPrunus if there were commercial production of GMPrunus species. The results of this review suggest that the commercialization of one GMPrunus species can create coexistence issues for commercial non-GMPrunus production. Despite advances in molecular markers and genetic analysis in agroecology, there remains limited information on the ecological diversity, metapopulation nature, population dynamics, and direct measures of gene flow among different subgenera represented in thePrunus genus. Robust environmental impact, biosafety and coexistence assessments for GMPrunus species will require better understanding of the mechanisms of gene flow and hybridization among species within thePrunus species complex.