The genus Aphelenchoides Fischer, 1894, encompasses nearly 200 species with significant ecological and economic importance, yet its taxonomy remains complex due to morphological similarities among species and limited molecular data. In this study, we describe a new species, Aphelenchoides vinhphucensis sp. n., collected from the rhizosphere of rice (Oryza sativa L.) in Vinh Phuc Province, Vietnam. The new species is distinguished by its morphological characteristics, including a slender stylet (9.6–12.7 μm), distinct lateral fields with four lines, a conical tail with a pointed mucro, and a well-developed post-uterine sac. Males feature three pairs of caudal papillae and arcuate spicules. Scanning electron microscopy provided detailed insights into surface features, complementing light microscopy observations. Molecular analyses of the D2-D3 regions of 28S rRNA and 18S rRNA supported the distinct phylogenetic placement of Aphelenchoides vinhphucensis sp. n., differentiating it from closely related species. Bayesian phylogenetic analysis confirmed its divergence, contributing to our understanding of biodiversity of the genus Aphelenchoides. This integrative approach highlights the importance of combining classical morphological methods with modern molecular tools for accurate species identification. The discovery of Aphelenchoides vinhphucensis sp. n. underscores the nematode diversity in Vietnam, especially those associated with rice cultivation.